barSeed - Barley Seed Development Database

Probe CUST_39476_PI390587928

Source Contig U35_13942

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39476_PI390587928	Hv_44K_v2	TTGTATCTCTGATTTCTGTGGGAAATACTACTACAAAAGATGCACTCCTTCTGCAAAAAA	695	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374191	752	3e-22	619 - 674	100	56 / 56	plus	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584 ABC44597
MLOC	MLOC_35005.1	648	3e-22	136 - 191	100	56 / 56	minus	ABC00085 ABC00096 ABC00137 ABC00145 ABC00158 ABC00167 ABC00286 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00656 ABC00671 ABC00869 ABC34584
JLOC1	JLOC1_22617.1	645	1e-22	127 - 182	100	56 / 56	minus
Harvest21	ABC00737	717	6e-22	664 - 717	100	54 / 54	plus
Harvest35	U35_13942	766	3e-25	696 - 755	100	60 / 60	plus

Contig Sequence (766 bp)

>U35_13942 766 Hv_44K_v2
CGGATCGATCCCCCCTCCGGCGAACCTCCTTCCCCCAATAAAACCTGCGACCCCTGCGCC
GTCCCAACCCACAAACTCAGAGCAGACCGCAGTAATTCCGATCCAACACCCGCTCCCCAC
ACCTCGAGTGGTTTGCCGTTCGCCGGAGAAGCAGCAAGAAGATGGCCGGAAGGAAGGGCG
GCGAGAGGAAGAAGGCGGTGACCCGCTCCGTGAAGGCCGGGCTCCAGTTCCCCGTCGGCC
GCATCGGGCGCTACCTCAAGAAGGGCCGCTACGCGCAGCGCGTCGGCTCCGGCGCCCCAG
TCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGCTCCTGGAGCTTGCCGGCAACG
CGGCCAAGGACAACAAGAAGACCCGCATCATCCCGCGCCACCTGCTCCTCGCCGTCCGCA
ACGACCAGGAGCTCGGCAGGCTGCTCGCCGGCGTCACCATCGCCCACGGCGGCGTCATTC
CCAACATTAACTCCGTCCTGCTCCCCAAGAAGTCCCCCGCCGCGGCCGAGAAGGAGGCCA
CCAAGTCCCCCAAGAAGAAGGCCGCCACCAAGTCCCCCAAGAAGGCCGCAGCCAAGGTGT
AGACCTAGCCAGTGTTGCTCTGTTCCATTTCTCATGGACAAGACGACTAGTTTGTAGGTA
GCTGACCTTTCGTCAGATTCGTCGAGCAAGGGACATTGTATCTCTGATTTCTGTGGGAAA
TACTACTACAAAAGATGCACTCCTTCTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_13942 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None