barSeed - Barley Seed Development Database

Probe CUST_35771_PI390587928

Source Contig U35_400

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35771_PI390587928	Hv_44K_v2	GTGGGTCGTTGAAATTTGGTCAACCACTTCGTGTTGCATGTTATAATAAATTTGCAATAA	1192	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56052.1	1307	7e-23	20 - 79	98	59 / 60	minus	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00841 ABC00949 ABC00951 ABC00981 ABC26749 ABC31752 ABC53022
JLOC1	JLOC1_36223.1	1250	4e-23	20 - 79	98	59 / 60	minus
Harvest21	ABC00422	1226	3e-25	1161 - 1220	100	60 / 60	plus	ABC00422
Harvest35	U35_400	1287	3e-25	1193 - 1252	100	60 / 60	plus

Contig Sequence (1287 bp)

>U35_400 1287 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGAAGCCATCTCACACTAAGCCTCTCCCTCACCCCATCAGA
GAACCTAAGGGACAACTCCCGTCTTAGCAGCCCAATGGCGGCGGCCACCATGTCCCTTTC
CTCCCCGGCCTTTGCCGGCAAGGCGGTGAAGAATGTGTCGTTGTCGGCCCTCTTCGGCGA
GGCACGCGTCACCATGCGCAAGACTACGGCAAAGGCAAAGCAAGTTGCTTCGAGCAGCCC
GTGGTACGGTGCCGATCGCGTGCTCTACCTCGGCCCACTATCAGGTGAGCCGCCGAGCTA
TTTGACCGGTGAGTTCCCCGGTGACTATGGGTGGGACACCGCTGGACTCTCAGCTGACCC
TGAGACCTTCGCAAAGAACCGCGAGCTGGAGGTGATCCATTGTCGATGGGCCATGCTTGG
TGCCCTCGGATGTGTCTTCCCTGAGTTGCTCGCCCGCAATGGCGTTAAGTTTGGCGAGGC
TGTTTGGTTCAAGGCCGGCTCCCAAATCTTCAGCGAGGGCGGCCTCGACTATCTCGGCAA
CCCTAGTCTCGTCCACGCGCAAAGCATTCTGGCCATTTGGGCTTGCCAAGTTGTGCTCAT
GGGCGCCGTCGAGGGGTACCGCATTGCCGGTGGCCCACTCGGCGAGATCGTTGACCCACT
TTATCCTGGAGGCAGCTTTGACCCACTCGGCCTAGCCGACGACCCTGAGGCGTTCGCGGA
GCTCAAGGTGAAGGAGATCAAGAACGGCCGCCTTGCCATGTTCTCCATGTTTGGCTTCTT
TGTGCAGGCCATCGTCACCGGCAAAGGCCCGCTAGAGAACCTCGCTGACCATATCACTGA
TCCCGTCAACAACAATGCATGGGCATTTGCCACCAACTTCGTGCCCGGCAAGTAAGACAC
CTTCTAGGGCTGAGTTGAGAGCTGGCAGGATGGTCTGCTATGTACTACCATCATGTAAAT
TACAAGAATCAGTGCAAAATCATTGTTTGATTTGCCAACATTAAAAAAAAAAACCTGTAT
TTTAGCTACTTGTTGTGGTTGCACTCTACCACACTAGACAATGATTTGTGCACTGCTAAT
GTCGGCTGTCAGGAAATATGTGGTGCTCAAATTTGGTAAAAAAAAAAAAAATCTCAATTA
GGCTAGCGCTCTAAATACTTGCCAAATGTCAACCAATAGGAATAACCTCATTGTGGGTCG
TTGAAATTTGGTCAACCACTTCGTGTTGCATGTTATAATAAATTTGCAATAATAAACGCT
TTGATAGTGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_400 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g41710.1	262	1e-174	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi4g07380.1	322	0.0
Arabidopsis v10	AT2G34420.1	265	2e-164	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light harvesting complex gene B1B2 \| chr2:14522716-14523513 REVERSE LENGTH=265