barSeed - Barley Seed Development Database

Probe CUST_28839_PI390587928

Source Contig U35_29046

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28839_PI390587928	Hv_44K_v2	CATTTCTCAACAAGGTTCGAGAACAACACATAATCATACTTTTAAGCTACCCATGTCATT	138	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360618	4810	7e-23	3452 - 3511	98	59 / 60	plus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC09523 ABC10724 ABC35392 ABC36259 ABC43245 ABC45683 ABC45928 ABC49726 ABC52601
MLOC	MLOC_76729.3	2453	7e-23	1186 - 1245	98	59 / 60	minus	ABC09523 ABC45683
MLOC	MLOC_76729.2	2638	7e-23	1247 - 1306	98	59 / 60	minus	ABC09523 ABC45683
MLOC	MLOC_76729.5	2148	7e-23	795 - 854	98	59 / 60	minus	ABC09523
MLOC	MLOC_76729.4	1960	7e-23	627 - 686	98	59 / 60	minus	ABC09523
MLOC	MLOC_76729.1	2656	7e-23	1303 - 1362	98	59 / 60	minus	ABC09523 ABC45683
JLOC1	JLOC1_51169.4	2593	4e-23	1295 - 1354	98	59 / 60	plus
JLOC1	JLOC1_51169.3	2671	4e-23	1292 - 1351	98	59 / 60	plus
JLOC1	JLOC1_51169.2	2622	4e-23	1228 - 1287	98	59 / 60	plus
JLOC1	JLOC1_51169.1	2564	4e-23	1185 - 1244	98	59 / 60	plus
Harvest21	ABC28203	198	3e-25	139 - 198	100	60 / 60	plus
Harvest21	ABC20131	944	1e-23	587 - 646	98	59 / 60	plus
Harvest35	U35_29046	198	3e-25	139 - 198	100	60 / 60	plus
Harvest35	U35_3479	1961	1e-23	587 - 646	98	59 / 60	plus

Contig Sequence (198 bp)

>U35_29046 198 Hv_44K_v2
AACTGTCACGAAGATTAAACACAGGGCAAATAAGGATCCTCATGTTGTGGGAACTGAGCG
GTCTGGAGAGGCTGATACGATGAGGGCTTGTCCAAGGGCTCTAGTAGGTTCTTCTGCTGT
AAATGACGACAGTACTGGCATTTCTCAACAAGGTTCGAGAACAACACATAATCATACTTT
TAAGCTACCCATGTCATT

Homology of Contig U35_29046 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None