barSeed - Barley Seed Development Database

Probe CUST_17538_PI390587928

Source Contig U35_32563

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17538_PI390587928	Hv_44K_v2	TGAAGACTGATCACATTTTTGAGGTTCCTGACACTCCTGACCGAATACAGCAGTCAGTGT	340	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360618	4810	7e-23	2371 - 2430	98	59 / 60	plus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC09523 ABC10724 ABC35392 ABC36259 ABC43245 ABC45683 ABC45928 ABC49726 ABC52601
MLOC	MLOC_76729.3	2453	7e-23	2267 - 2326	98	59 / 60	minus	ABC09523 ABC45683
MLOC	MLOC_76729.2	2638	7e-23	2328 - 2387	98	59 / 60	minus	ABC09523 ABC45683
MLOC	MLOC_76729.5	2148	7e-23	1876 - 1935	98	59 / 60	minus	ABC09523
MLOC	MLOC_76729.4	1960	7e-23	1708 - 1767	98	59 / 60	minus	ABC09523
MLOC	MLOC_76729.1	2656	7e-23	2384 - 2443	98	59 / 60	minus	ABC09523 ABC45683
JLOC1	JLOC1_51169.4	2593	4e-23	214 - 273	98	59 / 60	plus
JLOC1	JLOC1_51169.3	2671	4e-23	211 - 270	98	59 / 60	plus
JLOC1	JLOC1_51169.2	2622	4e-23	147 - 206	98	59 / 60	plus
JLOC1	JLOC1_51169.1	2564	4e-23	104 - 163	98	59 / 60	plus
Harvest35	U35_32563	447	3e-25	341 - 400	100	60 / 60	plus

Contig Sequence (447 bp)

>U35_32563 447 Hv_44K_v2
ATTCCTCTCCTCGCCCCTCCGGACTCCCCACGCGCGCCCCCCCTAATCCGACCCGAGGCG
GCTGTAGACTCCATAGAGTTGCCGTTGCCGACGCGCCCTCCGCGTCCGCGGCCACCAATC
CATCACGCCGCCGCCGCCGCCGCCGCACCCCGCTCAAACCCCTCCGCGTTTCTCGCGCAC
CGCGGCCATCGCGTCACCGCTGTCTCAACCCCGCCCGCAAATCTAGCCGTTCGGTTGCTG
AGATAGCATTGGAGAAACTTCTGATCGTGTTTACGTGTAAAGGTCAAGGAGGGCAAACTT
ATCTTCAACTGAAATAAGTGGTGGGACAATATGGTTGACATGAAGACTGATCACATTTTT
GAGGTTCCTGACACTCCTGACCGAATACAGCAGTCAGTGTGCCCTGTATCAAGCTCAGCT
GCTACAAGAGGCGTAACAAGGATGGCT

Homology of Contig U35_32563 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None