- Probe CUST_10588_PI390587928
- Source Contig U35_21645
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10588_PI390587928 | Hv_44K_v2 | TCTATCCACTTACATTCACTGTGATGACTTCCGTGCACTTGTACCAAAGGTGTCTACTAT | 1026 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.240 | 1.548 | 1.115 | 1.004 | 0.759 | 0.657 |
| Raw | 11.852 | 23.772 | 14.137 | 21.028 | 4.069 | 3.291 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK362294 | 1381 | 2e-24 | 466 - 525 | 100 | 60 / 60 | plus | ABC01965 ABC01966 ABC01968 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC24714 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701 |
| MLOC | AK377159 | 1521 | 2e-24 | 901 - 960 | 100 | 60 / 60 | plus | ABC24714 |
| MLOC | MLOC_20334.4 | 746 | 2e-24 | 574 - 633 | 100 | 60 / 60 | minus | ABC24714 |
| MLOC | MLOC_20334.3 | 1127 | 2e-24 | 939 - 998 | 100 | 60 / 60 | minus | ABC24714 |
| MLOC | MLOC_20334.1 | 1500 | 2e-24 | 1292 - 1351 | 100 | 60 / 60 | minus | ABC24714 |
| MLOC | MLOC_20334.2 | 1268 | 2e-24 | 1060 - 1119 | 100 | 60 / 60 | minus | ABC24714 |
| MLOC | MLOC_25934.1 | 234 | 9e-22 | 28 - 85 | 98 | 57 / 58 | minus | None |
| JLOC1 | JLOC1_14090.6 | 1224 | 8e-25 | 148 - 207 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_14090.5 | 984 | 8e-25 | 140 - 199 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_14090.3 | 826 | 8e-25 | 150 - 209 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_14090.1 | 585 | 8e-25 | 141 - 200 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_17659.1 | 114 | 5e-22 | 27 - 84 | 98 | 57 / 58 | minus | |
| Harvest21 | ABC16190 | 1089 | 3e-25 | 1027 - 1086 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_21645 | 1089 | 3e-25 | 1027 - 1086 | 100 | 60 / 60 | plus |
Contig Sequence (1089 bp)
>U35_21645 1089 Hv_44K_v2 CAGCTCTCGCGACCGCAAACGATTAATGATTTATCTGCATATTAATTTCCAGATAAAACA TAATCTACTGCAATGGGTAAATGCTCGCTGTCACTTGGCAACTCTCTCTTGCAGGCGGGC CACACCTGGAATGGCGGCTCGTGGTCGTGGACTGGTGCACAGCCACCGCAGGCGGCGGCG CTTCCGCCACCGTCGGAAACTTCCAAAGTCGACACGGCGGCGGCCGATCCCCGCCATTGC TCGCGCTCCACGCCCCACCACGGCTAGGTACTACTCCATTATAGTAAAGACTCGCGCATG TGCTGTCGTCCTTGTTTCGCCTGATAAAGAAATGCCACCGGGAAGTCGTCGCCGATGCGG CCGCGGCCAGATCCACATCCACCAACCACCGCTCGCTGTCGCCCGTCGCCACCGGTCTTC CCCTCATGCATCCCCTCTCCTCCTCCGCCTCCGCCGCCCCGGCGACGCACCACCGGGGCC GCGGCCTTCGCCTTCGCGCTCCTCGCCGCCGCATTCTTCCTCACCCCCTGCCGCGACGCC TCCGCCCCGTCCTCCACGTCCTACCCGTCCTACGGCCACCGGCTCCCCACGCTCGTCGAC CTCACCCTCATCGCCGGCGCCAGGGAGAAGAGCGTCGTGTGCCTCGACGGGACCCCGCCT GGGTACCACTGGCTCCCGGGGTTCGGGGAGGGGTCCGACAAGTGGCTCCTCCACTTGGAG GGTGGAAGCTGGTGCAGGAACCTGACATGGTGCGCTCAGCGCAAGGAAACAAATCTAGGT TCCTCTGACCACATGGAAAGGCGGGTTGAGTTCGTTGGCATCTTGAGCGACGACGAACTG CAGAATCCAGACTTTTACAATTGGAATAAAGTGAAGGTAAGGTATTGTGATGGTGCATCA TTTTCTGGAAATTTCGAAGAGGAATTTCAGAGGTCAACGCATCTGGGATGAAGTTATGCG TGAACTTTTATCAAAGGGTTTGTCACATGCTAAAGAGGCTTTTCTTACGGGCTGCTCGGG TGGTGGTCTATCCACTTACATTCACTGTGATGACTTCCGTGCACTTGTACCAAAGGTGTC TACTATTAA
Homology of Contig U35_21645 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g74330.1 | 431 | 2e-77 | protein|pectinacetylesterase domain containing protein, expressed |
| Brachypodium v1_2 | Bradi2g62410.1 | 442 | 9e-87 | |
| Arabidopsis v10 | None |