Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u5723756.9--4813-3654Containing




Transcripts from Gene HORVU7Hr1G121210

TranscriptLength(bp)Description
HORVU7Hr1G121210.13249gene=HORVU7Hr1G121210 CDS=859-1734
HORVU7Hr1G121210.22409gene=HORVU7Hr1G121210 CDS=572-1960
HORVU7Hr1G121210.31932gene=HORVU7Hr1G121210 CDS=515-1483
HORVU7Hr1G121210.42330gene=HORVU7Hr1G121210 CDS=406-1881
HORVU7Hr1G121210.52133gene=HORVU7Hr1G121210 CDS=611-1810
HORVU7Hr1G121210.62142gene=HORVU7Hr1G121210 CDS=486-1853
HORVU7Hr1G121210.71769gene=HORVU7Hr1G121210 CDS=512-1480
HORVU7Hr1G121210.82004gene=HORVU7Hr1G121210 CDS=327-1715
HORVU7Hr1G121210.91521gene=HORVU7Hr1G121210 CDS=88-1287
HORVU7Hr1G121210.102143gene=HORVU7Hr1G121210 CDS=943-1911
HORVU7Hr1G121210.112081gene=HORVU7Hr1G121210 CDS=587-1849
HORVU7Hr1G121210.121560gene=HORVU7Hr1G121210 CDS=134-1330
HORVU7Hr1G121210.132699gene=HORVU7Hr1G121210 CDS=1081-2469
HORVU7Hr1G121210.142523gene=HORVU7Hr1G121210 CDS=1095-2294
HORVU7Hr1G121210.152160gene=HORVU7Hr1G121210 CDS=670-1932
HORVU7Hr1G121210.161478gene=HORVU7Hr1G121210 CDS=3-1478
HORVU7Hr1G121210.17956gene=HORVU7Hr1G121210 CDS=123-956
HORVU7Hr1G121210.18318gene=HORVU7Hr1G121210 CDS=167-283



Exon Structure of HORVU7Hr1G121210


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g51260.1 +1 2e-58 179 128/281 (46%) protein|MYB family transcription factor, putative, expressed
TAIR PP10None-----
BRACH PP3 Bradi1g29680.1.p +1 5e-86 229 135/277 (49%) pacid=32806206 transcript=Bradi1g29680.1 locus=Bradi1g29680 ID=Bradi1g29680.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons