- Transcript HORVU7Hr1G121210.11
- Transcript IDHORVU7Hr1G121210.11
- Gene IDHORVU7Hr1G121210
Barley RTD
Exon Structure of HORVU7Hr1G121210.11
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 653255206 | 653254150 | - |
| chr7H | 2 | 653255658 | 653255311 | - |
| chr7H | 3 | 653255900 | 653255838 | - |
| chr7H | 4 | 653256103 | 653255992 | - |
| chr7H | 5 | 653256324 | 653256220 | - |
| chr7H | 6 | 653257544 | 653257149 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g51260.1 | +2 | 8e-100 | 282 | 232/426 (54%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g29680.1.p | +2 | 2e-133 | 373 | 251/419 (60%) | pacid=32806206 transcript=Bradi1g29680.1 locus=Bradi1g29680 ID=Bradi1g29680.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2081 bp)
>HORVU7Hr1G121210.11 2081 150831_barley_pseudomolecules CCGCTTCCTCCTCCTCCGTCTCCCCCGGCAGCACGTGCGCGCCCCGGCGGCCTCCTCTCT TAGCTGCGCCGCTCGCCGGAGCGTCTCTTCTCGTTTGGCTTCTTTTCTTTGGGTCAGTTT CCTTGGGCCACGGTGTCTCGCCGGCCGGCTCCGGTCGCCGAGAGGGAGGGTGTTTTTTCG GTGCTTCCTGGGCGATCCCGGCGAGAGACGCTTCTGTCCCAGCCTCCGCCGCAGGCCGCC CGCTTCTGTCCCCGCCTTTGCCGCCCGCCGTCTGCTTCTGTCCCCGCCTTCGCCGTCCGC CGTCTGCCGTCTGCTTCGTTCGATCTCGGTGACGGGGACGCCGAGATTCGGACCTCCGCC GGGGAACGGCTCATGGCTTCCATGGCGCTCGCGGAGGAAACGGATGCACTGGATTCATCC AGATTGCCGAACGGCAAAGGGTTATCGGTGGATGTTGCAATGCAACCCAATGAGGAGGGG ATGGGTGAGCATCCTGTCAAGCCTAGGAAGCCATACACGATCACAAAGCAGCGGGAGAAG TGGACGGACGAAGAGCACGAGAAGTTCCTGGAGGCGCTGAAGCTGTATGGCCGGTCCTGG CGTCAGATACAAGGAACACATTGGCACAAAGACCGCTGTCCAAATCCGAAGCCATGCCCA GAAGTTTTTCTCCAAGGTGGTGCGCGAACCCGGAGCTAAAATTGAGATCGAGATCCCTCC CCCTAGGCCAAAGAGGAAGCCGCTGCATCCATATCCTCGCAAGCGTGCGGACTCCTGCAA CGGGGCAAACCCAGCAAATGGACCATCCAAGCTTGCTCAAATTTCATCATCTTCTGGTTC TGACCAAGAGAATGGTTCTCCCGTGTCAGTGTTGTCTGCAATGCAGTCGGATGCTTTTGG ATCATCGATGTCAAACCCGTCATCTCGCAGTACTTCCCCAGAGTCGTCAGATGAGGAGAA TAATGTTCCTCCAATGGTCAGCAGAGAGGAAGGTCAACAAACAGGGATAAATCAATCCCA CAAGGAGGCTGATCAGGAAAACAAAGATACGGGTACCTCCGAAGAGGATTCTTCTGATGA GGTGCAGGTAACAAGCGTGAAGCTGTTCGGGAAGACGGTCGTCATCCCAGACCCGAGGAA AAGGTGCTCCCCGGATCCAGGCTCAGGGCATGAAAACGGAGGGCAAACCTCACATTCCTC TAACAAAGGAACATCACAAGCCCCACTGGCTGTAGAGATTCCAACACATACAAAGGGAGA ACAAATCTCACAATCCTCTAACAAGGCAACATCACAAGCCCCATTGGCTGTAGAGGTTCC GACGTATACAAAGGGAGAGCAAATCTCACAATTCTCTAACAAGGCAACTTCACAAGCCCC ACTGGCTGTAGAAATTCCAGCATTTGCTGCGCCGCCAAGTGGGTGGGTTCTTCCGTACAA TTCGTTCCCTCTACATTTTGGGGAATCGGCGGAAGCCAGAATCACCCCTTTACACATGTG GTGGCCATACTATGGGTTCCCTATCAGCCACCCTGGAGGGCTGAGTGTAGTGCCGCACAA CGAAGCTACTGATGAGAGCGAAGCTGCAAAGAGCCCTCTGGTTGAATCAAGCTCGAAGAG CCTTCCTGTTGAATCAAGCTCGGACTCCGATGACAATGCTGAGACAACAGCCAACAAGGA GTGGAAAGTGCTCGAGTCGCTCGGGACGGCACAGGTCCCTCGGTCAGCTTCAAGTTTTCA GCTAAAACCAAGCGAGAACTCGGCTTTTGTGAGAGTGAAGCCGATCATAGGCAGCGGAGA AGAGCCGGCGAGGGGGTTTGTGCCATACAAAAGATGTAGAGTTGAATGACGAAACCGGGG ATCTTCTTCCCCGTGTCTAATTTAACTATGAACCCTAGGAGGAGCCTGTTCCACATATTC CTTTGCTCCGGTGTATTCTTAGGTTTTACTCGCACACAGAGATTGGCGGTGGTCTGGCCC AGGAAATGCACGTTGTTTCCTGCTTGGGCCTTGTAATGAGCAGGGCACAGGTGGTTGTTG TAAGTGCTGTAGGATAAAAGCAGGAGGTTTTGTAGGGATGC