- Transcript HORVU7Hr1G121210.5
- Transcript IDHORVU7Hr1G121210.5
- Gene IDHORVU7Hr1G121210
Barley RTD
Exon Structure of HORVU7Hr1G121210.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 653255206 | 653254059 | - |
| chr7H | 2 | 653255658 | 653255311 | - |
| chr7H | 3 | 653256103 | 653255992 | - |
| chr7H | 4 | 653256324 | 653256220 | - |
| chr7H | 5 | 653257568 | 653257149 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g51260.1 | +2 | 8e-87 | 238 | 211/403 (52%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g29680.1.p | +2 | 6e-121 | 331 | 231/396 (58%) | pacid=32806206 transcript=Bradi1g29680.1 locus=Bradi1g29680 ID=Bradi1g29680.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2133 bp)
>HORVU7Hr1G121210.5 2133 150831_barley_pseudomolecules CACCTTCCTCCTCCTCCTCCGCCTCCGCTTCCTCCTCCTCCGTCTCCCCCGGCAGCACGT GCGCGCCCCGGCGGCCTCCTCTCTTAGCTGCGCCGCTCGCCGGAGCGTCTCTTCTCGTTT GGCTTCTTTTCTTTGGGTCAGTTTCCTTGGGCCACGGTGTCTCGCCGGCCGGCTCCGGTC GCCGAGAGGGAGGGTGTTTTTTCGGTGCTTCCTGGGCGATCCCGGCGAGAGACGCTTCTG TCCCAGCCTCCGCCGCAGGCCGCCCGCTTCTGTCCCCGCCTTTGCCGCCCGCCGTCTGCT TCTGTCCCCGCCTTCGCCGTCCGCCGTCTGCCGTCTGCTTCGTTCGATCTCGGTGACGGG GACGCCGAGATTCGGACCTCCGCCGGGGAACGGCTCATGGCTTCCATGGCGCTCGCGGAG GAAACGGATGCACTGGATTCATCCAGATTGCCGAACGGCAAAGGGTTATCGGTGGATGTT GCAATGCAACCCAATGAGGAGGGGATGGGTGAGCATCCTGTCAAGCCTAGGAAGCCATAC ACGATCACAAAGCAGCGGGAGAAGTGGACGGACGAAGAGCACGAGAAGTTCCTGGAGGCG CTGAAGCTGTATGGCCGGTCCTGGCGTCAGATACAAGGTGGTGCGCGAACCCGGAGCTAA AATTGAGATCGAGATCCCTCCCCCTAGGCCAAAGAGGAAGCCGCTGCATCCATATCCTCG CAAGCGTGCGGACTCCTGCAACGGGGCAAACCCAGCAAATGGACCATCCAAGCTTGCTCA AATTTCATCATCTTCTGGTTCTGACCAAGAGAATGGTTCTCCCGTGTCAGTGTTGTCTGC AATGCAGTCGGATGCTTTTGGATCATCGATGTCAAACCCGTCATCTCGCAGTACTTCCCC AGAGTCGTCAGATGAGGAGAATAATGTTCCTCCAATGGTCAGCAGAGAGGAAGGTCAACA AACAGGGATAAATCAATCCCACAAGGAGGCTGATCAGGAAAACAAAGATACGGGTACCTC CGAAGAGGATTCTTCTGATGAGGTGCAGGTAACAAGCGTGAAGCTGTTCGGGAAGACGGT CGTCATCCCAGACCCGAGGAAAAGGTGCTCCCCGGATCCAGGCTCAGGGCATGAAAACGG AGGGCAAACCTCACATTCCTCTAACAAAGGAACATCACAAGCCCCACTGGCTGTAGAGAT TCCAACACATACAAAGGGAGAACAAATCTCACAATCCTCTAACAAGGCAACATCACAAGC CCCATTGGCTGTAGAGGTTCCGACGTATACAAAGGGAGAGCAAATCTCACAATTCTCTAA CAAGGCAACTTCACAAGCCCCACTGGCTGTAGAAATTCCAGCATTTGCTGCGCCGCCAAG TGGGTGGGTTCTTCCGTACAATTCGTTCCCTCTACATTTTGGGGAATCGGCGGAAGCCAG AATCACCCCTTTACACATGTGGTGGCCATACTATGGGTTCCCTATCAGCCACCCTGGAGG GCTGAGTGTAGTGCCGCACAACGAAGCTACTGATGAGAGCGAAGCTGCAAAGAGCCCTCT GGTTGAATCAAGCTCGAAGAGCCTTCCTGTTGAATCAAGCTCGGACTCCGATGACAATGC TGAGACAACAGCCAACAAGGAGTGGAAAGTGCTCGAGTCGCTCGGGACGGCACAGGTCCC TCGGTCAGCTTCAAGTTTTCAGCTAAAACCAAGCGAGAACTCGGCTTTTGTGAGAGTGAA GCCGATCATAGGCAGCGGAGAAGAGCCGGCGAGGGGGTTTGTGCCATACAAAAGATGTAG AGTTGAATGACGAAACCGGGGATCTTCTTCCCCGTGTCTAATTTAACTATGAACCCTAGG AGGAGCCTGTTCCACATATTCCTTTGCTCCGGTGTATTCTTAGGTTTTACTCGCACACAG AGATTGGCGGTGGTCTGGCCCAGGAAATGCACGTTGTTTCCTGCTTGGGCCTTGTAATGA GCAGGGCACAGGTGGTTGTTGTAAGTGCTGTAGGATAAAAGCAGGAGGTTTTGTAGGGAT GCCAATTCTCTGTCTGTCTCATGTTGTTGATGTAAAAGCAAAGAATTTTTGTGTCACCAT TGTTGATTCTTAATGGAAATCGACTTCTCTGAA