- Transcript HORVU7Hr1G121210.1
- Transcript IDHORVU7Hr1G121210.1
- Gene IDHORVU7Hr1G121210
Barley RTD
Exon Structure of HORVU7Hr1G121210.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 653256115 | 653252867 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g51260.1 | +1 | 2e-58 | 179 | 128/281 (46%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g29680.1.p | +1 | 5e-86 | 229 | 135/277 (49%) | pacid=32806206 transcript=Bradi1g29680.1 locus=Bradi1g29680 ID=Bradi1g29680.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3249 bp)
>HORVU7Hr1G121210.1 3249 150831_barley_pseudomolecules TGCTTTGATCAGCCTAGGAAGCCATACACGATCACAAAGCAGCGGGAGAAGTGGACGGAC GAAGAGCACGAGAAGTTCCTGGAGGCGCTGAAGCTGTATGGCCGGTCCTGGCGTCAGATA CAAGGTGTGTGCAGCCTTTATGAGTATAGCGCATCTCGTATAAGAATTTAAAGTAGTTGA AATAGCGATTCTGATTCATTCGGAACTGTTCTTTAGAACACATTGGCACAAAGACCGCTG TCCAAATCCGAAGCCATGCCCAGAAGTTTTTCTCCAAGGTGACTATGGCCCTTCCTGTAG TTATGATACATTTGGCATGTATACCACCCTGTGGACAGCGGTTTATGTTATATGTTTGTA TACTACATTTACTTGTAGAAGCAGAATTGGTGGCAGCTAATTTGAACCTTTTGAATGTTG ACCGTGTTTTCTCATGCGGGGGCTGCTTATCGTGCAGGTGGTGCGCGAACCCGGAGCTAA AATTGAGATCGAGATCCCTCCCCCTAGGCCAAAGAGGAAGCCGCTGCATCCATATCCTCG CAAGCGTGCGGACTCCTGCAACGGGGCAAACCCAGCAAATGGACCATCCAAGCTTGCTCA AATTTCATCATCTTCTGGTTCTGACCAAGAGAATGGTTCTCCCGTGTCAGTGTTGTCTGC AATGCAGTCGGATGCTTTTGGATCATCGATGTCAAACCCGTCATCTCGCAGTACTTCCCC AGAGTCGTCAGATGAGGAGAATAATGTTCCTCCAATGGTCAGCAGAGAGGAAGGTCAACA AACAGGGATAAATCAATCCCACAAGGTAAAGAACCATCATTCAACCCAGTTAGCTGTACT GCTGAATAGGCTCTATGAATGACGTGTTGTACTTACCAGACTGCTCATGTTCCTTGCTTC CTTTTGCAGGAGGCTGATCAGGAAAACAAAGATACGGGTACCTCCGAAGAGGATTCTTCT GATGAGGTGCAGGTAACAAGCGTGAAGCTGTTCGGGAAGACGGTCGTCATCCCAGACCCG AGGAAAAGGTGCTCCCCGGATCCAGGCTCAGGGCATGAAAACGGAGGGCAAACCTCACAT TCCTCTAACAAAGGAACATCACAAGCCCCACTGGCTGTAGAGATTCCAACACATACAAAG GGAGAACAAATCTCACAATCCTCTAACAAGGCAACATCACAAGCCCCATTGGCTGTAGAG GTTCCGACGTATACAAAGGGAGAGCAAATCTCACAATTCTCTAACAAGGCAACTTCACAA GCCCCACTGGCTGTAGAAATTCCAGCATTTGCTGCGCCGCCAAGTGGGTGGGTTCTTCCG TACAATTCGTTCCCTCTACATTTTGGGGAATCGGCGGAAGCCAGAATCACCCCTTTACAC ATGTGGTGGCCATACTATGGGTTCCCTATCAGCCACCCTGGAGGGCTGAGTGTAGTGCCG CACAACGAAGCTACTGATGAGAGCGAAGCTGCAAAGAGCCCTCTGGTTGAATCAAGCTCG AAGAGCCTTCCTGTTGAATCAAGCTCGGACTCCGATGACAATGCTGAGACAACAGCCAAC AAGGAGTGGAAAGTGCTCGAGTCGCTCGGGACGGCACAGGTCCCTCGGTCAGCTTCAAGT TTTCAGCTAAAACCAAGCGAGAACTCGGCTTTTGTGAGAGTGAAGCCGATCATAGGCAGC GGAGAAGAGCCGGCGAGGGGGTTTGTGCCATACAAAAGATGTAGAGTTGAATGACGAAAC CGGGGATCTTCTTCCCCGTGTCTAATTTAACTATGAACCCTAGGAGGAGCCTGTTCCACA TATTCCTTTGCTCCGGTGTATTCTTAGGTTTTACTCGCACACAGAGATTGGCGGTGGTCT GGCCCAGGAAATGCACGTTGTTTCCTGCTTGGGCCTTGTAATGAGCAGGGCACAGGTGGT TGTTGTAAGTGCTGTAGGATAAAAGCAGGAGGTTTTGTAGGGATGCCAATTCTCTGTCTG TCTCATGTTGTTGATGTAAAAGCAAAGAATTTTTGTGTCACCATTGTTGATTCTTAATGG AAATCGACTTCTCTGAATGAATGAAGCTGGCATGTTTGGTTGTTGCGGGCTGTTGTGTTG GTAAGAGTCTGAAGATGCTGGTGCCTTTTGTCCCGAGCATGCAGGCAGAGCTTGGCCGTG TTCTTCAGACTGGAGTATGGAAGGAAACATTGTTCATCATTGGTAGCAATTGCATGCCTT TGAAGGTTTCCAGCCATGGCTGCTAAATTCAATTCCATCAAGTGGGACATTATGATATTT GTCTGAACATTGCAGTTGCCGAACATTCCAATGTTTGCCGCAACTGTTGGCTAGCAATGT CTGACCATTCAATTCTGTCAAGCAAACAGCAGAGGCTGCTTAGTGACTGGGAATTGTACG GGACATAAATCGTGAGTTACTGGGATAAACATTAAGGCTTGTTTTTTGTACTTGTATATA TCCAGAGGATGCAAATATCTCATGTGAAGAACCGAAATGGAAATGGATAGCTAAAGGATC CATTGCGACAAAACGGGTAAATTTGTATCAGGAAGCAGAGAGTTGTTTTTAATGAGCTTG TCAACAGAAGCTTGATCCAGCTTGCTGATGTTAATGTTGACTATTATGATTTTAACAACA TTGTCAGGTTCAATCAGATGAAGCGAATTTTGCCACAGTTTAAAACCGTGCCTGCAATCC TTTGCCAAACAAGATCCGTCGACTATCCCTGCAATCCTGTGGTTTGAACATAAATTGACA ATCCATGCCATCACAGGAAGCAAGTTACATATTCGCTCATGGAATGCCTTTGCACGTGTT TGACATATGTGCGGGTCATTCGTCACCCGAAACACAAACATGTAAGAAATATAAGAAGTT TTCTATCAACTGATGTATTTGAGAATTCAGAGTGAAGGAATCACATAGCTTCCTGAAGAT ATTAGAAAGCTACAGAACTTAGAGACTCTTGATTTACGGGACAGTTCAGTTGGAAAATTG CCATCAACCATAGCCCTCCGATGGCTATAAAATTTGGCGTGGCAAAGAAACGGGTATAAA AATTTGCAGCTGGTGCGACGCCACCACTCCGATGGCTCAACCTTTCCTGGAGTGCAGCTC AAGTTTGGTTGAGATATAGTGATGGGTCTGACATAGGCATCAAACATCTTGCAAGCCTTA TGTACATCAAACTTTTTGTGATGATGCAACTCGGGAGGTTGTCTTGAAGATGAGAGGTTT AAGAGTTAC