- Gene BART1_0-u57237
- Gene IDBART1_0-u57237
- Location chr7H: 653250589 - 653259055
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU7Hr1G121210 | 56.9 | - | - | 4813 | -3654 | Containing |
Transcripts from Gene BART1_0-u57237
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u57237.001 | 7519 | 7519 bp MSTRG.57237.1 MSTRG.57237 |
| BART1_0-u57237.002 | 3881 | 3881 bp MSTRG.57237.2 MSTRG.57237 |
| BART1_0-u57237.003 | 5308 | 5308 bp MSTRG.57237.3 MSTRG.57237 |
| BART1_0-u57237.004 | 5382 | 5382 bp MSTRG.57237.4 MSTRG.57237 |
| BART1_0-u57237.005 | 3041 | 3041 bp MSTRG.57237.5 MSTRG.57237 |
| BART1_0-u57237.006 | 2180 | 2180 bp MSTRG.57237.6 MSTRG.57237 |
| BART1_0-u57237.007 | 2301 | 2301 bp MSTRG.57237.7 MSTRG.57237 |
| BART1_0-u57237.008 | 2100 | 2100 bp MSTRG.57237.8 MSTRG.57237 |
| BART1_0-u57237.009 | 3113 | 3113 bp MSTRG.57237.9 MSTRG.57237 |
Exon Structure of BART1_0-u57237
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g51260.1 | +3 | 7e-118 | 383 | 286/505 (57%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | AT5G37260 @ ARAPORT AT5G37260.1 @ TAIR |
+3 | 3e-34 | 134 | 101/238 (42%) | Symbols: RVE2, CIR1 | Homeodomain-like superfamily protein | chr5:14751344-14752972 REVERSE LENGTH=287 |
| BRACH PP3 | Bradi1g29680.1.p | +3 | 1e-154 | 487 | 310/499 (62%) | pacid=32806206 transcript=Bradi1g29680.1 locus=Bradi1g29680 ID=Bradi1g29680.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0005634 | nucleus |
| GO:0003677 | DNA binding |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons