- Transcript HORVU7Hr1G121210.2
- Transcript IDHORVU7Hr1G121210.2
- Gene IDHORVU7Hr1G121210
Barley RTD
Exon Structure of HORVU7Hr1G121210.2
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 653255207 | 653253933 | - |
| chr7H | 2 | 653255658 | 653255312 | - |
| chr7H | 3 | 653255899 | 653255838 | - |
| chr7H | 4 | 653256103 | 653255992 | - |
| chr7H | 5 | 653256324 | 653256220 | - |
| chr7H | 6 | 653257170 | 653256663 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g51260.1 | +2 | 7e-125 | 383 | 286/505 (57%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | AT5G37260 @ ARAPORT AT5G37260.1 @ TAIR |
+2 | 7e-35 | 134 | 101/238 (42%) | Symbols: RVE2, CIR1 | Homeodomain-like superfamily protein | chr5:14751344-14752972 REVERSE LENGTH=287 |
| BRACH PP3 | Bradi1g29680.1.p | +2 | 9e-166 | 487 | 310/499 (62%) | pacid=32806206 transcript=Bradi1g29680.1 locus=Bradi1g29680 ID=Bradi1g29680.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2409 bp)
>HORVU7Hr1G121210.2 2409 150831_barley_pseudomolecules GGCTTCCATGGCGCTCGCGGAGGTAAAGATCCCTCCTTTTTTTTCTTCTCCGCGCGCGTT CCCTGGCCGTTCCTCGCCTGCTGCAAAATTTTACTTGCGCAGTAAAAAACATTTTTCCTG GGAGGGATTTTACCTTGTATATTTCTGTTCTTGATGGCTTCTCCGTTGGATAATTTGCCA AAATGAGTTTTTTATTTATGTATTTACTTCTGCATCTACCACCAGTAGTCTCTAGTTTTT TTTTTTTCAACATTTTTGGAGGGATTTTTATCTTGCGAGAAATGGCCTGTTTCTAGACAC TTCTGTTTTGGGAGGATACAGACCACACCACCACAATATCTTTAGAGGCTTCGAGAGCTA GAAATGGGGAGGACACAACTTACATACATATTTCATACCAAACATGAGAGCTAGAGATGG GGATTATTTTAGTTAGAGCCACCTACCAAACATGCCAGGAGGCCTGATTGCCAAATCCAG AAACACTTTATGGTGCTTTCCATCCTAGGAAACGGATGCACTGGATTCATCCAGATTGCC GAACGGCAAAGGGTTATCGGTGGATGTTGCAATGCAACCCAATGAGGAGGGGATGGGTGA GCATCCTGTCAAGCCTAGGAAGCCATACACGATCACAAAGCAGCGGGAGAAGTGGACGGA CGAAGAGCACGAGAAGTTCCTGGAGGCGCTGAAGCTGTATGGCCGGTCCTGGCGTCAGAT ACAAGAACACATTGGCACAAAGACCGCTGTCCAAATCCGAAGCCATGCCCAGAAGTTTTT CTCCAAGGTGGTGCGCGAACCCGGAGCTAAAATTGAGATCGAGATCCCTCCCCCTAGGCC AAAGAGGAAGCCGCTGCATCCATATCCTCGCAAGCGTGCGGACTCCTGCAACGGGGCAAA CCCAGCAAATGGACCATCCAAGCTTGCTCAAATTTCATCATCTTCTGGTTCTGACCAAGA GAATGGTTCTCCCGTGTCAGTGTTGTCTGCAATGCAGTCGGATGCTTTTGGATCATCGAT GTCAAACCCGTCATCTCGCAGTACTTCCCCAGAGTCGTCAGATGAGGAGAATAATGTTCC TCCAATGGTCAGCAGAGAGGAAGGTCAACAAACAGGGATAAATCAATCCCACAAGGAGGC TGATCAGGAAAACAAAGATACGGGTACCTCCGAAGAGGATTCTTCTGATGAGGTGCAGGT AACAAGCGTGAAGCTGTTCGGGAAGACGGTCGTCATCCCAGACCCGAGGAAAAGGTGCTC CCCGGATCCAGGCTCAGGGCATGAAAACGGAGGGCAAACCTCACATTCCTCTAACAAAGG AACATCACAAGCCCCACTGGCTGTAGAGATTCCAACACATACAAAGGGAGAACAAATCTC ACAATCCTCTAACAAGGCAACATCACAAGCCCCATTGGCTGTAGAGGTTCCGACGTATAC AAAGGGAGAGCAAATCTCACAATTCTCTAACAAGGCAACTTCACAAGCCCCACTGGCTGT AGAAATTCCAGCATTTGCTGCGCCGCCAAGTGGGTGGGTTCTTCCGTACAATTCGTTCCC TCTACATTTTGGGGAATCGGCGGAAGCCAGAATCACCCCTTTACACATGTGGTGGCCATA CTATGGGTTCCCTATCAGCCACCCTGGAGGGCTGAGTGTAGTGCCGCACAACGAAGCTAC TGATGAGAGCGAAGCTGCAAAGAGCCCTCTGGTTGAATCAAGCTCGAAGAGCCTTCCTGT TGAATCAAGCTCGGACTCCGATGACAATGCTGAGACAACAGCCAACAAGGAGTGGAAAGT GCTCGAGTCGCTCGGGACGGCACAGGTCCCTCGGTCAGCTTCAAGTTTTCAGCTAAAACC AAGCGAGAACTCGGCTTTTGTGAGAGTGAAGCCGATCATAGGCAGCGGAGAAGAGCCGGC GAGGGGGTTTGTGCCATACAAAAGATGTAGAGTTGAATGACGAAACCGGGGATCTTCTTC CCCGTGTCTAATTTAACTATGAACCCTAGGAGGAGCCTGTTCCACATATTCCTTTGCTCC GGTGTATTCTTAGGTTTTACTCGCACACAGAGATTGGCGGTGGTCTGGCCCAGGAAATGC ACGTTGTTTCCTGCTTGGGCCTTGTAATGAGCAGGGCACAGGTGGTTGTTGTAAGTGCTG TAGGATAAAAGCAGGAGGTTTTGTAGGGATGCCAATTCTCTGTCTGTCTCATGTTGTTGA TGTAAAAGCAAAGAATTTTTGTGTCACCATTGTTGATTCTTAATGGAAATCGACTTCTCT GAATGAATGAAGCTGGCATGTTTGGTTGTTGCGGGCTGTTGTGTTGGTAAGAGTCTGAAG ATGCTGGTGCCTTTTGTCCCGAGCATGCAGGCAGAGCTTGGCCGTGTTCTTCAGACTGGA GTATGGAAG