- Transcript HORVU7Hr1G121210.9
- Transcript IDHORVU7Hr1G121210.9
- Gene IDHORVU7Hr1G121210
Barley RTD
Exon Structure of HORVU7Hr1G121210.9
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 653255206 | 653254148 | - |
| chr7H | 2 | 653255658 | 653255311 | - |
| chr7H | 3 | 653256105 | 653255992 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g51260.1 | +1 | 1e-80 | 243 | 211/403 (52%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g29680.3.p | +1 | 3e-118 | 352 | 238/404 (59%) | pacid=32806209 transcript=Bradi1g29680.3 locus=Bradi1g29680 ID=Bradi1g29680.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1521 bp)
>HORVU7Hr1G121210.9 1521 150831_barley_pseudomolecules AGCCTAGGAAGCCATACACGATCACAAAGCAGCGGGAGAAGTGGACGGACGAAGAGCACG AGAAGTTCCTGGAGGCGCTGAAGCTGTATGGCCGGTCCTGGCGTCAGATACAAGGTGGTG CGCGAACCCGGAGCTAAAATTGAGATCGAGATCCCTCCCCCTAGGCCAAAGAGGAAGCCG CTGCATCCATATCCTCGCAAGCGTGCGGACTCCTGCAACGGGGCAAACCCAGCAAATGGA CCATCCAAGCTTGCTCAAATTTCATCATCTTCTGGTTCTGACCAAGAGAATGGTTCTCCC GTGTCAGTGTTGTCTGCAATGCAGTCGGATGCTTTTGGATCATCGATGTCAAACCCGTCA TCTCGCAGTACTTCCCCAGAGTCGTCAGATGAGGAGAATAATGTTCCTCCAATGGTCAGC AGAGAGGAAGGTCAACAAACAGGGATAAATCAATCCCACAAGGAGGCTGATCAGGAAAAC AAAGATACGGGTACCTCCGAAGAGGATTCTTCTGATGAGGTGCAGGTAACAAGCGTGAAG CTGTTCGGGAAGACGGTCGTCATCCCAGACCCGAGGAAAAGGTGCTCCCCGGATCCAGGC TCAGGGCATGAAAACGGAGGGCAAACCTCACATTCCTCTAACAAAGGAACATCACAAGCC CCACTGGCTGTAGAGATTCCAACACATACAAAGGGAGAACAAATCTCACAATCCTCTAAC AAGGCAACATCACAAGCCCCATTGGCTGTAGAGGTTCCGACGTATACAAAGGGAGAGCAA ATCTCACAATTCTCTAACAAGGCAACTTCACAAGCCCCACTGGCTGTAGAAATTCCAGCA TTTGCTGCGCCGCCAAGTGGGTGGGTTCTTCCGTACAATTCGTTCCCTCTACATTTTGGG GAATCGGCGGAAGCCAGAATCACCCCTTTACACATGTGGTGGCCATACTATGGGTTCCCT ATCAGCCACCCTGGAGGGCTGAGTGTAGTGCCGCACAACGAAGCTACTGATGAGAGCGAA GCTGCAAAGAGCCCTCTGGTTGAATCAAGCTCGAAGAGCCTTCCTGTTGAATCAAGCTCG GACTCCGATGACAATGCTGAGACAACAGCCAACAAGGAGTGGAAAGTGCTCGAGTCGCTC GGGACGGCACAGGTCCCTCGGTCAGCTTCAAGTTTTCAGCTAAAACCAAGCGAGAACTCG GCTTTTGTGAGAGTGAAGCCGATCATAGGCAGCGGAGAAGAGCCGGCGAGGGGGTTTGTG CCATACAAAAGATGTAGAGTTGAATGACGAAACCGGGGATCTTCTTCCCCGTGTCTAATT TAACTATGAACCCTAGGAGGAGCCTGTTCCACATATTCCTTTGCTCCGGTGTATTCTTAG GTTTTACTCGCACACAGAGATTGGCGGTGGTCTGGCCCAGGAAATGCACGTTGTTTCCTG CTTGGGCCTTGTAATGAGCAGGGCACAGGTGGTTGTTGTAAGTGCTGTAGGATAAAAGCA GGAGGTTTTGTAGGGATGCCA