- Transcript HORVU7Hr1G121210.7
- Transcript IDHORVU7Hr1G121210.7
- Gene IDHORVU7Hr1G121210
Barley RTD
Exon Structure of HORVU7Hr1G121210.7
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 653255206 | 653254093 | - |
| chr7H | 2 | 653255660 | 653255311 | - |
| chr7H | 3 | 653255900 | 653255838 | - |
| chr7H | 4 | 653256103 | 653255993 | - |
| chr7H | 5 | 653256326 | 653256220 | - |
| chr7H | 6 | 653257173 | 653257150 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g51260.1 | +2 | 5e-74 | 244 | 220/451 (49%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g29680.1.p | +2 | 4e-131 | 336 | 231/399 (58%) | pacid=32806206 transcript=Bradi1g29680.1 locus=Bradi1g29680 ID=Bradi1g29680.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1769 bp)
>HORVU7Hr1G121210.7 1769 150831_barley_pseudomolecules CATGGCTTCCATGGCGCTCGCGGAAGGAAACGGATGCACTGGATTCATCCAGATTGCCGA ACGGCAAAGGGTTATCGGTGGATGTTGCAATGCAACCCAATGAGGAGGGGATGGGTGAGC ATCCTGTCAAGCCTAGGAAGCCATACACGATCACAAAGCAGCGGGAGAAGTGGACGGACG AAGAGCACGAGAAGTTCCTGGAGGCGCTGAAGCTGTATGGCCGGTCCTGGCGTCAGATAC AAGAACACATTGGCACAAAGACCGCTGTCCAAATCCGAAGCCATGCCCAGAAGTTTTTCT CCAAGAGGTGGTGCGCGAACCCGGAGCTAAAATTGAGATCGAGATCCCTCCCCCTAGGCC AAAGAGGAAGCCGCTGCATCCATATCCTCGCAAGCGTGCGGACTCCTGCAACGGGGCAAA CCCAGCAAATGGACCATCCAAGCTTGCTCAAATTTCATCATCTTCTGGTTCTGACCAAGA GAATGGTTCTCCCGTGTCAGTGTTGTCTGCAATGCAGTCGGATGCTTTTGGATCATCGAT GTCAAACCCGTCATCTCGCAGTACTTCCCCAGAGTCGTCAGATGAGGAGAATAATGTTCC TCCAATGGTCAGCAGAGAGGAAGGTCAACAAACAGGGATAAATCAATCCCACAAGGAGGC TGATCAGGAAAACAAAGATACGGGTACCTCCGAAGAGGATTCTTCTGATGAGGTGCAGGT AACAAGCGTGAAGCTGTTCGGGAAGACGGTCGTCATCCCAGACCCGAGGAAAAGGTGCTC CCCGGATCCAGGCTCAGGGCATGAAAACGGAGGGCAAACCTCACATTCCTCTAACAAAGG AACATCACAAGCCCCACTGGCTGTAGAGATTCCAACACATACAAAGGGAGAACAAATCTC ACAATCCTCTAACAAGGCAACATCACAAGCCCCATTGGCTGTAGAGGTTCCGACGTATAC AAAGGGAGAGCAAATCTCACAATTCTCTAACAAGGCAACTTCACAAGCCCCACTGGCTGT AGAAATTCCAGCATTTGCTGCGCCGCCAAGTGGGTGGGTTCTTCCGTACAATTCGTTCCC TCTACATTTTGGGGAATCGGCGGAAGCCAGAATCACCCCTTTACACATGTGGTGGCCATA CTATGGGTTCCCTATCAGCCACCCTGGAGGGCTGAGTGTAGTGCCGCACAACGAAGCTAC TGATGAGAGCGAAGCTGCAAAGAGCCCTCTGGTTGAATCAAGCTCGAAGAGCCTTCCTGT TGAATCAAGCTCGGACTCCGATGACAATGCTGAGACAACAGCCAACAAGGAGTGGAAAGT GCTCGAGTCGCTCGGGACGGCACAGGTCCCTCGGTCAGCTTCAAGTTTTCAGCTAAAACC AAGCGAGAACTCGGCTTTTGTGAGAGTGAAGCCGATCATAGGCAGCGGAGAAGAGCCGGC GAGGGGGTTTGTGCCATACAAAAGATGTAGAGTTGAATGACGAAACCGGGGATCTTCTTC CCCGTGTCTAATTTAACTATGAACCCTAGGAGGAGCCTGTTCCACATATTCCTTTGCTCC GGTGTATTCTTAGGTTTTACTCGCACACAGAGATTGGCGGTGGTCTGGCCCAGGAAATGC ACGTTGTTTCCTGCTTGGGCCTTGTAATGAGCAGGGCACAGGTGGTTGTTGTAAGTGCTG TAGGATAAAAGCAGGAGGTTTTGTAGGGATGCCAATTCTCTGTCTGTCTCATGTTGTTGA TGTAAAAGCAAAGAATTTTTGTGTCACCA