- Transcript HORVU7Hr1G121210.6
- Transcript IDHORVU7Hr1G121210.6
- Gene IDHORVU7Hr1G121210
Barley RTD
Exon Structure of HORVU7Hr1G121210.6
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 653255206 | 653254093 | - |
| chr7H | 2 | 653255660 | 653255311 | - |
| chr7H | 3 | 653256103 | 653255992 | - |
| chr7H | 4 | 653256324 | 653256237 | - |
| chr7H | 5 | 653257140 | 653256663 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g51260.1 | +3 | 8e-97 | 307 | 246/459 (54%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g29680.2.p | +3 | 1e-132 | 398 | 265/452 (59%) | pacid=32806207 transcript=Bradi1g29680.2 locus=Bradi1g29680 ID=Bradi1g29680.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2142 bp)
>HORVU7Hr1G121210.6 2142 150831_barley_pseudomolecules CCCTCCTTTTTTTTCTTCTCCGCGCGCGTTCCCTGGCCGTTCCTCGCCTGCTGCAAAATT TTACTTGCGCAGTAAAAAACATTTTTCCTGGGAGGGATTTTACCTTGTATATTTCTGTTC TTGATGGCTTCTCCGTTGGATAATTTGCCAAAATGAGTTTTTTATTTATGTATTTACTTC TGCATCTACCACCAGTAGTCTCTAGTTTTTTTTTTTTCAACATTTTTGGAGGGATTTTTA TCTTGCGAGAAATGGCCTGTTTCTAGACACTTCTGTTTTGGGAGGATACAGACCACACCA CCACAATATCTTTAGAGGCTTCGAGAGCTAGAAATGGGGAGGACACAACTTACATACATA TTTCATACCAAACATGAGAGCTAGAGATGGGGATTATTTTAGTTAGAGCCACCTACCAAA CATGCCAGGAGGCCTGATTGCCAAATCCAGAAACACTTTATGGTGCTTTCCATCCTAGGA AACGGATGCACTGGATTCATCCAGATTGCCGAACGGCAAAGGGTTATCGGTGGATGTTGC AATGCAACCCAATGAGGAGGGGATGGCCTAGGAAGCCATACACGATCACAAAGCAGCGGG AGAAGTGGACGGACGAAGAGCACGAGAAGTTCCTGGAGGCGCTGAAGCTGTATGGCCGGT CCTGGCGTCAGATACAAGAGGTGGTGCGCGAACCCGGAGCTAAAATTGAGATCGAGATCC CTCCCCCTAGGCCAAAGAGGAAGCCGCTGCATCCATATCCTCGCAAGCGTGCGGACTCCT GCAACGGGGCAAACCCAGCAAATGGACCATCCAAGCTTGCTCAAATTTCATCATCTTCTG GTTCTGACCAAGAGAATGGTTCTCCCGTGTCAGTGTTGTCTGCAATGCAGTCGGATGCTT TTGGATCATCGATGTCAAACCCGTCATCTCGCAGTACTTCCCCAGAGTCGTCAGATGAGG AGAATAATGTTCCTCCAATGGTCAGCAGAGAGGAAGGTCAACAAACAGGGATAAATCAAT CCCACAAGGAGGCTGATCAGGAAAACAAAGATACGGGTACCTCCGAAGAGGATTCTTCTG ATGAGGTGCAGGTAACAAGCGTGAAGCTGTTCGGGAAGACGGTCGTCATCCCAGACCCGA GGAAAAGGTGCTCCCCGGATCCAGGCTCAGGGCATGAAAACGGAGGGCAAACCTCACATT CCTCTAACAAAGGAACATCACAAGCCCCACTGGCTGTAGAGATTCCAACACATACAAAGG GAGAACAAATCTCACAATCCTCTAACAAGGCAACATCACAAGCCCCATTGGCTGTAGAGG TTCCGACGTATACAAAGGGAGAGCAAATCTCACAATTCTCTAACAAGGCAACTTCACAAG CCCCACTGGCTGTAGAAATTCCAGCATTTGCTGCGCCGCCAAGTGGGTGGGTTCTTCCGT ACAATTCGTTCCCTCTACATTTTGGGGAATCGGCGGAAGCCAGAATCACCCCTTTACACA TGTGGTGGCCATACTATGGGTTCCCTATCAGCCACCCTGGAGGGCTGAGTGTAGTGCCGC ACAACGAAGCTACTGATGAGAGCGAAGCTGCAAAGAGCCCTCTGGTTGAATCAAGCTCGA AGAGCCTTCCTGTTGAATCAAGCTCGGACTCCGATGACAATGCTGAGACAACAGCCAACA AGGAGTGGAAAGTGCTCGAGTCGCTCGGGACGGCACAGGTCCCTCGGTCAGCTTCAAGTT TTCAGCTAAAACCAAGCGAGAACTCGGCTTTTGTGAGAGTGAAGCCGATCATAGGCAGCG GAGAAGAGCCGGCGAGGGGGTTTGTGCCATACAAAAGATGTAGAGTTGAATGACGAAACC GGGGATCTTCTTCCCCGTGTCTAATTTAACTATGAACCCTAGGAGGAGCCTGTTCCACAT ATTCCTTTGCTCCGGTGTATTCTTAGGTTTTACTCGCACACAGAGATTGGCGGTGGTCTG GCCCAGGAAATGCACGTTGTTTCCTGCTTGGGCCTTGTAATGAGCAGGGCACAGGTGGTT GTTGTAAGTGCTGTAGGATAAAAGCAGGAGGTTTTGTAGGGATGCCAATTCTCTGTCTGT CTCATGTTGTTGATGTAAAAGCAAAGAATTTTTGTGTCACCA