- Gene HORVU3Hr1G089130
- Gene IDHORVU3Hr1G089130
- Location chr3H: 627472565 - 627481767
Barley RTD
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| BART1_0-u23592 | 97.7 | + | + | 9054 | -64 | Partial-Overlap |
Transcripts from Gene HORVU3Hr1G089130
| Transcript | Length(bp) | Description |
|---|---|---|
| HORVU3Hr1G089130.1 | 2309 | gene=HORVU3Hr1G089130 CDS=1-2268 |
| HORVU3Hr1G089130.2 | 2040 | gene=HORVU3Hr1G089130 CDS=1-1983 |
| HORVU3Hr1G089130.3 | 2243 | gene=HORVU3Hr1G089130 CDS=987-2165 |
| HORVU3Hr1G089130.4 | 2575 | gene=HORVU3Hr1G089130 CDS=999-2276 |
| HORVU3Hr1G089130.5 | 2969 | gene=HORVU3Hr1G089130 CDS=1856-2689 |
| HORVU3Hr1G089130.6 | 2666 | gene=HORVU3Hr1G089130 CDS=1-2229 |
| HORVU3Hr1G089130.7 | 2351 | gene=HORVU3Hr1G089130 CDS=916-2193 |
| HORVU3Hr1G089130.8 | 1227 | gene=HORVU3Hr1G089130 CDS=1-762 |
| HORVU3Hr1G089130.9 | 2848 | gene=HORVU3Hr1G089130 CDS=1713-2687 |
| HORVU3Hr1G089130.10 | 2679 | gene=HORVU3Hr1G089130 CDS=470-2518 |
| HORVU3Hr1G089130.11 | 2472 | gene=HORVU3Hr1G089130 CDS=1012-2289 |
| HORVU3Hr1G089130.12 | 2721 | gene=HORVU3Hr1G089130 CDS=747-2294 |
| HORVU3Hr1G089130.13 | 2642 | gene=HORVU3Hr1G089130 CDS=938-2215 |
| HORVU3Hr1G089130.14 | 2562 | gene=HORVU3Hr1G089130 CDS=3-971 |
| HORVU3Hr1G089130.15 | 2591 | gene=HORVU3Hr1G089130 CDS=911-2164 |
| HORVU3Hr1G089130.16 | 2688 | gene=HORVU3Hr1G089130 CDS=2-2272 |
| HORVU3Hr1G089130.17 | 1045 | gene=HORVU3Hr1G089130 CDS=3-944 |
| HORVU3Hr1G089130.18 | 2583 | gene=HORVU3Hr1G089130 CDS=1083-2168 |
| HORVU3Hr1G089130.19 | 2508 | gene=HORVU3Hr1G089130 CDS=3-929 |
| HORVU3Hr1G089130.20 | 2737 | gene=HORVU3Hr1G089130 CDS=93-2321 |
| HORVU3Hr1G089130.21 | 827 | gene=HORVU3Hr1G089130 CDS=200-736 |
| HORVU3Hr1G089130.22 | 781 | gene=HORVU3Hr1G089130 CDS=200-781 |
| HORVU3Hr1G089130.23 | 2516 | gene=HORVU3Hr1G089130 CDS=3-1199 |
| HORVU3Hr1G089130.24 | 2927 | gene=HORVU3Hr1G089130 CDS=3-1208 |
| HORVU3Hr1G089130.25 | 2556 | gene=HORVU3Hr1G089130 CDS=864-2141 |
| HORVU3Hr1G089130.26 | 2516 | gene=HORVU3Hr1G089130 CDS=1016-2101 |
| HORVU3Hr1G089130.27 | 2621 | gene=HORVU3Hr1G089130 CDS=886-2184 |
| HORVU3Hr1G089130.28 | 2532 | gene=HORVU3Hr1G089130 CDS=901-2154 |
| HORVU3Hr1G089130.29 | 2538 | gene=HORVU3Hr1G089130 CDS=869-2122 |
| HORVU3Hr1G089130.30 | 1822 | gene=HORVU3Hr1G089130 CDS=3-1682 |
| HORVU3Hr1G089130.31 | 1774 | gene=HORVU3Hr1G089130 CDS=309-1586 |
| HORVU3Hr1G089130.32 | 1718 | gene=HORVU3Hr1G089130 CDS=18-1238 |
| HORVU3Hr1G089130.33 | 2103 | gene=HORVU3Hr1G089130 CDS=603-1688 |
| HORVU3Hr1G089130.34 | 1316 | gene=HORVU3Hr1G089130 CDS=2-901 |
Exon Structure of HORVU3Hr1G089130
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g67420.1 | +2 | 0.0 | 385 | 197/294 (67%) | protein|lipase, putative, expressed |
| TAIR PP10 | AT1G05790 @ ARAPORT AT1G05790.1 @ TAIR |
+2 | 4e-65 | 132 | 65/105 (62%) | Symbols: | lipase class 3 family protein | chr1:1733039-1737365 FORWARD LENGTH=687 |
| BRACH PP3 | Bradi2g57770.2.p | +2 | 2e-157 | 413 | 215/305 (70%) | pacid=32774683 transcript=Bradi2g57770.2 locus=Bradi2g57770 ID=Bradi2g57770.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons