Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G089130.13

ChromosomeExonStartStopDirection
chr3H1627472849627472793+
chr3H2627476335627476197+
chr3H3627476767627476548+
chr3H4627476952627476852+
chr3H5627477223627477102+
chr3H6627477389627477298+
chr3H7627478018627477913+
chr3H8627478248627478099+
chr3H9627479059627478932+
chr3H10627479367627479237+
chr3H11627479958627479861+
chr3H12627480848627480066+
chr3H13627481757627481243+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g67420.1 +2 0.0 568 281/398 (71%) protein|lipase, putative, expressed
TAIR PP10 AT1G05790 @ ARAPORT
AT1G05790.1 @ TAIR		 +1 1e-130 311 155/308 (50%) Symbols: | lipase class 3 family protein | chr1:1733039-1737365 FORWARD LENGTH=687
BRACH PP3 Bradi2g57770.4.p +2 0.0 613 308/410 (75%) pacid=32774684 transcript=Bradi2g57770.4 locus=Bradi2g57770 ID=Bradi2g57770.4.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2642 bp)

>HORVU3Hr1G089130.13 2642 150831_barley_pseudomolecules
GCCGGCGCCATCGGGGCGCACGTCGACAGCGACCGCGACCTCCGGCATCTCTCGCGGCTA
CGATACAATAGATGGCTTTGGTGGGCAAGGTTTGGGATGGTAATTACAGTGCTCCAATTT
GTGCTGGCACTTTATTTGATGTGCATTATTGTAAAGGATTTCTCATCTGGGAAGTCGTTG
AAAGAGTGTTTTTCAGGACACGGCAAGGACAACAATGACTGGAAGAATATCTTGTTAATA
ATTTTTCTTGTTCTTATGTGGGTGGGAACAATAGTCCAGTGTGCCACAGGTTCCGATGTA
TTAAGATGGAGGTCCTTTTATGCAACTCATGATATAGCATGGAGGGCTCACTACAGGGAG
GTGTTTGATCATGGCATTCGTGAGGTTTTATGTTGTCTAGGACGGGTGAAGTACTCGAGT
GTACTGGAAGATGATGATATATGTGTCGTGGCAAAACTGTTGGGCGATATTATGGCTTAT
CGTGCATCTGGAACTGGCCATCTTGAGCTCATAGCAGGGTTTTCATTGTTGCAGAAATCC
AAGATGTCGACGGTTGTTTCAAGAGAACAAGCAGAGGCTCCTCATGATCTCATCCAAGAG
GCTATTCTGTTTCATCCATTTGCTGAAGCTGCATATACAGGTCCGTTACTTGATTTTGGA
AGGAATCCTCTTATGTTTCCCTGTGTTTGGCTCAATAGGCAAGGTATTTTAACTCCATGG
ACTCGTGCTAGACGACCAATCCTTGAAGGAGATAATTGGTGGAGAGGGCATGCAGCGGCT
TTCCTAAAGTATGTCAATGTGCCCCCAGAAGTTCTTCGGAAAGGGCGTGTTAGCCAGACA
AAACGTGAGGCTGCCTACTTTATTATTGTCTTACATGACTTGAAAACAGTAGTCATTGCC
ATTCGTGGAACCGAGACTCCAGAAGATGTTATAACCGATGGCTTATGTAGGGAATGCTCT
CTTACGATGGATGACTTGGATGGGCTGTTCTGATCAGTTACCCCCTCAAGTGAAGGAGGC
TGTGCTCTCGTCTTTTCCACACTATGGACATGCGGGAATTATTGAATCAGCTCGAGAATT
GTACACAAAGCTTGAAGGGCAGCCCATTCATCAAGATAAGTCAGAGCTGATGACAGCTGG
GTTCTTATCTTCGCTGCTCGGAGCTGGATGTGAGTGTGATGGATACAATATTGAAATTGT
TGGACATTCTTTAGGAGGTGCTGTAGCTGCACTTCTTGGTATTAGGCTATATAAACAGTT
TCCAAAATTACATGTCTTTACTTATGGAGCTGCACCCTGTGTAGATTTCGTGATAGCAGA
TGCATGCTCACAGTTTGTTACCAGCATTGTCCACAACGATGAATTTTCCTCAAGATTATC
CATGAATTCGGTAATTAGATTACGTGGCGCTGCTATCAAAGCTCTATCAAAGGATACTTC
GCCAAATTCTACTAAAGTTGGCAAACTAGTGAGTGGCTTCACGAGCATCAAAGGGCATGA
TGAACAATGCGATGTGGTTCAATTTGCTGCTCCTGGTGCTCTTCAGACAGTCAGCGATGC
AAAGCTAAGTAACGGTCAAATCTATGGAAAGAGTGTAATGCATACAGTTAGAGGTGGTGT
GTTCCTCTTTGGTCAAGCAATATCTTGCTTGGTAAATACTCCAAAGCATAGAATTAGCTC
CACTGCGGCAATTAAGTACGAGTTGGGGCGATCTAGAACAACGTTAACCTATAATGGAGA
AAAATTGACTGTTGCTTCCCATGGTGTTCTGGATGGTGCACCTTCTGGAGAACCTAGCGA
TGCATACCGAGATGGCAAGTTTCCAGAAGCTGGCTTGGATGAATCCGGAAGTAGTTACAG
GTTACCTCATTCAAATGATGGTACTGAGCTCTCACCTGCTCCTGATCACATCTGTACAAC
AAGTTTATCTGAAGGGCAGTCGCCAGAGGTGTACCTCCCTGGCCTCATTATTCATATCGT
TCCCATAAAAAATGGTACCTCTCCATCACGGAAGACACTTGTGACTCGTCACAAGAACAA
GAGTTATAAAGCATTTGTAGCAAATCGGCAGGACTTTATGGACCTTGTTGTGACCCCTCG
CATGTTCCTTGATCATCTCCCATGGAGGTGCCACTATGGCATGCAAAGGGTTATAGAAAG
ACGGAACCGGAACCAGCCCATTCGCAATTCATCCACCGGAGAGGATTCTGTCTAACTGAA
AACTGTTAGGCTGGTACAAATGTATCATTATTCAGCTTGACCTCTTCCTTGTTTCTTCTG
TACATATACAAGTTATGGAGATATGATCATGTGCTCTTCACATACTTAATTTAGGAAGGT
GTAGAAGAAGCAAGGGCCGAAACGAGCCTTGAGTGCATCCTGATGAGCATTACTTGACCT
CACCATTGTTGTATTCAGCTTTCCTGGTAGCTAGGGCAGCTCTTATATATACACCATCGG
TCAACGAAGACCGGCTTCTTTGTTTTATGACAAGCTTGTACTACTAAATTAAATCCTCTG
GTGTCAAACTTTTGCTTCGAGCAGTGTTGTAACTTTGACACCAGCACATGTAAGTTAACG
CTGTAAAATCCGAACTGCCATGAATTCATGGATAGAAAACAATATACAAGCTACTGTTTT
AT