Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G089130.22

ChromosomeExonStartStopDirection
chr3H1627476335627476197+
chr3H2627476767627476547+
chr3H3627476952627476852+
chr3H4627477223627477102+
chr3H5627477389627477298+
chr3H6627478018627477913+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g67420.1 +2 3e-103 317 154/219 (70%) protein|lipase, putative, expressed
TAIR PP10 AT1G05790 @ ARAPORT
AT1G05790.1 @ TAIR		 +2 6e-61 203 100/212 (47%) Symbols: | lipase class 3 family protein | chr1:1733039-1737365 FORWARD LENGTH=687
BRACH PP3 Bradi2g57770.4.p +2 3e-143 418 192/217 (88%) pacid=32774684 transcript=Bradi2g57770.4 locus=Bradi2g57770 ID=Bradi2g57770.4.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (781 bp)

>HORVU3Hr1G089130.22 781 150831_barley_pseudomolecules
CTACGATACAATAGATGGCTTTGGTGGGCAAGGTTTGGGATGGTAATTACAGTGCTCCAA
TTTGTGCTGGCACTTTATTTGATGTGCATTATTGTAAAGGATTTCTCATCTGGGAAGTCG
TTGAAAGAGTGTTTTTCAGGGACACGGCAAGGACAACAATGACTGGAAGAATATCTTGTT
AATAATTTTTCTTGTTCTTATGTGGGTGGGAACAATAGTCCAGTGTGCCACAGGTTCCGA
TGTATTAAGATGGAGGTCCTTTTATGCAACTCATGATATAGCATGGAGGGCTCACTACAG
GGAGGTGTTTGATCATGGCATTCGTGAGGTTTTATGTTGTCTAGGACGGGTGAAGTACTC
GAGTGTACTGGAAGATGATGATATATGTGTCGTGGCAAAACTGTTGGGCGATATTATGGC
TTATCGTGCATCTGGAACTGGCCATCTTGAGCTCATAGCAGGGTTTTCATTGTTGCAGAA
ATCCAAGATGTCGACGGTTGTTTCAAGAGAACAAGCAGAGGCTCCTCATGATCTCATCCA
AGAGGCTATTCTGTTTCATCCATTTGCTGAAGCTGCATATACAGGTCCGTTACTTGATTT
TGGAAGGAATCCTCTTATGTTTCCCTGTGTTTGGCTCAATAGGCAAGGTATTTTAACTCC
ATGGACTCGTGCTAGACGACCAATCCTTGAAGGAGATAATTGGTGGAGAGGGCATGCAGC
GGCTTTCCTAAAGTATGTCAATGTGCCCCCAGAAGTTCTTCGGAAAGGGCGTGTTAGCCA
G