Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G089130.19

ChromosomeExonStartStopDirection
chr3H1627472849627472845+
chr3H2627476335627476197+
chr3H3627476767627476548+
chr3H4627476952627476852+
chr3H5627477223627477102+
chr3H6627477361627477298+
chr3H7627478018627477897+
chr3H8627478248627478099+
chr3H9627479059627478932+
chr3H10627479367627479237+
chr3H11627479958627479919+
chr3H12627480848627480066+
chr3H13627481745627481243+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g67420.1 +3 0.0 478 227/312 (73%) protein|lipase, putative, expressed
TAIR PP10 AT1G05790 @ ARAPORT
AT1G05790.1 @ TAIR		 +3 2e-112 290 150/311 (48%) Symbols: | lipase class 3 family protein | chr1:1733039-1737365 FORWARD LENGTH=687
BRACH PP3 Bradi2g57770.2.p +3 0.0 565 269/325 (83%) pacid=32774683 transcript=Bradi2g57770.2 locus=Bradi2g57770 ID=Bradi2g57770.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2508 bp)

>HORVU3Hr1G089130.19 2508 150831_barley_pseudomolecules
CGCGGCTACGATACAATAGATGGCTTTGGTGGGCAAGGTTTGGGATGGTAATTACAGTGC
TCCAATTTGTGCTGGCACTTTATTTGATGTGCATTATTGTAAAGGATTTCTCATCTGGGA
AGTCGTTGAAAGAGTGTTTTTCAGGACACGGCAAGGACAACAATGACTGGAAGAATATCT
TGTTAATAATTTTTCTTGTTCTTATGTGGGTGGGAACAATAGTCCAGTGTGCCACAGGTT
CCGATGTATTAAGATGGAGGTCCTTTTATGCAACTCATGATATAGCATGGAGGGCTCACT
ACAGGGAGGTGTTTGATCATGGCATTCGTGAGGTTTTATGTTGTCTAGGACGGGTGAAGT
ACTCGAGTGTACTGGAAGATGATGATATATGTGTCGTGGCAAAACTGTTGGGCGATATTA
TGGCTTATCGTGCATCTGGAACTGGCCATCTTGAGCTCATAGCAGGGTTTTCATTGTTGC
AGAAATCCAAGATGTCGACGGTTGTTTCAAGAGAACAAGCAGAGGCTCCTCATGATCTCA
TCCAAGAGGCTATTCTGTTTCATCCATTTGCTGAAGCTGCATATACAGGTCCGTTACTTG
ATTTTGGAAGGAATCCTCTTATGTTTCCCTGTGTTTGGCTCAATAGGCAAGAACTTTACT
TCCTTAGACGACCAATCCTTGAAGGAGATAATTGGTGGAGAGGGCATGCAGCGGCTTTCC
TAAAGTATGTCAATGTGCCCCCAGAAGTTCTTCGGAAAGGGCGTGTTAGCCAGACAAAAC
GTGAGGCTGCCTACTTTATTATTGTCTTACATGACTTGAAAACAGTAGTCATTGCCATTC
GTGGAACCGAGACTCCAGAAGATGTTATAACCGATGGCTTATGTAGGGAATGCTCTCTTA
CGATGGATGACTTGGATGGGCTGTTCTGATCAGTTACCCCCTCAAGTGAAGGAGGCTGTG
CTCTCGTCTTTTCCACACTATGGACATGCGGGAATTATTGAATCAGCTCGAGAATTGTAC
ACAAAGCTTGAAGGGCAGCCCATTCATCAAGATAAGTCAGAGCTGATGACAGCTGGGTTC
TTATCTTCGCTGCTCGGAGCTGGATGTGAGTGTGATGGATACAATATTGAAATTGTTGGA
CATTCTTTAGGAGGTGCTGTAGCTGCACTTCTTGGTATTAGGATTTCGTGATAGCAGATG
CATGCTCACAGTTTGTTACCAGCATTGTCCACAACGATGAATTTTCCTCAAGATTATCCA
TGAATTCGGTAATTAGATTACGTGGCGCTGCTATCAAAGCTCTATCAAAGGATACTTCGC
CAAATTCTACTAAAGTTGGCAAACTAGTGAGTGGCTTCACGAGCATCAAAGGGCATGATG
AACAATGCGATGTGGTTCAATTTGCTGCTCCTGGTGCTCTTCAGACAGTCAGCGATGCAA
AGCTAAGTAACGGTCAAATCTATGGAAAGAGTGTAATGCATACAGTTAGAGGTGGTGTGT
TCCTCTTTGGTCAAGCAATATCTTGCTTGGTAAATACTCCAAAGCATAGAATTAGCTCCA
CTGCGGCAATTAAGTACGAGTTGGGGCGATCTAGAACAACGTTAACCTATAATGGAGAAA
AATTGACTGTTGCTTCCCATGGTGTTCTGGATGGTGCACCTTCTGGAGAACCTAGCGATG
CATACCGAGATGGCAAGTTTCCAGAAGCTGGCTTGGATGAATCCGGAAGTAGTTACAGGT
TACCTCATTCAAATGATGGTACTGAGCTCTCACCTGCTCCTGATCACATCTGTACAACAA
GTTTATCTGAAGGGCAGTCGCCAGAGGTGTACCTCCCTGGCCTCATTATTCATATCGTTC
CCATAAAAAATGGTACCTCTCCATCACGGAAGACACTTGTGACTCGTCACAAGAACAAGA
GTTATAAAGCATTTGTAGCAAATCGGCAGGACTTTATGGACCTTGTTGTGACCCCTCGCA
TGTTCCTTGATCATCTCCCATGGAGGTGCCACTATGGCATGCAAAGGGTTATAGAAAGAC
GGAACCGGAACCAGCCCATTCGCAATTCATCCACCGGAGAGGATTCTGTCTAACTGAAAA
CTGTTAGGCTGGTACAAATGTATCATTATTCAGCTTGACCTCTTCCTTGTTTCTTCTGTA
CATATACAAGTTATGGAGATATGATCATGTGCTCTTCACATACTTAATTTAGGAAGGTGT
AGAAGAAGCAAGGGCCGAAACGAGCCTTGAGTGCATCCTGATGAGCATTACTTGACCTCA
CCATTGTTGTATTCAGCTTTCCTGGTAGCTAGGGCAGCTCTTATATATACACCATCGGTC
AACGAAGACCGGCTTCTTTGTTTTATGACAAGCTTGTACTACTAAATTAAATCCTCTGGT
GTCAAACTTTTGCTTCGAGCAGTGTTGTAACTTTGACACCAGCACATGTAAGTTAACGCT
GTAAAATCCGAACTGCCATGAATTCATGGATAGAAAACAATATACAAG