- Transcript HORVU3Hr1G089130.34
- Transcript IDHORVU3Hr1G089130.34
- Gene IDHORVU3Hr1G089130
Barley RTD
Exon Structure of HORVU3Hr1G089130.34
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 627479958 | 627479931 | + |
| chr3H | 2 | 627480848 | 627480064 | + |
| chr3H | 3 | 627481745 | 627481243 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g67420.1 | +2 | 8e-117 | 360 | 186/281 (66%) | protein|lipase, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g57770.4.p | +2 | 7e-128 | 386 | 203/292 (70%) | pacid=32774684 transcript=Bradi2g57770.4 locus=Bradi2g57770 ID=Bradi2g57770.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1316 bp)
>HORVU3Hr1G089130.34 1316 150831_barley_pseudomolecules CAGATGCATGCTCACAGTTTGTTACCAGAGCATTGTCCACAACGATGAATTTTCCTCAAG ATTATCCATGAATTCGGTAATTAGATTACGTGGCGCTGCTATCAAAGCTCTATCAAAGGA TACTTCGCCAAATTCTACTAAAGTTGGCAAACTAGTGAGTGGCTTCACGAGCATCAAAGG GCATGATGAACAATGCGATGTGGTTCAATTTGCTGCTCCTGGTGCTCTTCAGACAGTCAG CGATGCAAAGCTAAGTAACGGTCAAATCTATGGAAAGAGTGTAATGCATACAGTTAGAGG TGGTGTGTTCCTCTTTGGTCAAGCAATATCTTGCTTGGTAAATACTCCAAAGCATAGAAT TAGCTCCACTGCGGCAATTAAGTACGAGTTGGGGCGATCTAGAACAACGTTAACCTATAA TGGAGAAAAATTGACTGTTGCTTCCCATGGTGTTCTGGATGGTGCACCTTCTGGAGAACC TAGCGATGCATACCGAGATGGCAAGTTTCCAGAAGCTGGCTTGGATGAATCCGGAAGTAG TTACAGGTTACCTCATTCAAATGATGGTACTGAGCTCTCACCTGCTCCTGATCACATCTG TACAACAAGTTTATCTGAAGGGCAGTCGCCAGAGGTGTACCTCCCTGGCCTCATTATTCA TATCGTTCCCATAAAAAATGGTACCTCTCCATCACGGAAGACACTTGTGACTCGTCACAA GAACAAGAGTTATAAAGCATTTGTAGCAAATCGGCAGGACTTTATGGACCTTGTTGTGAC CCCTCGCATGTTCCTTGATCATCTCCCATGGAGGTGCCACTATGGCATGCAAAGGGTTAT AGAAAGACGGAACCGGAACCAGCCCATTCGCAATTCATCCACCGGAGAGGATTCTGTCTA ACTGAAAACTGTTAGGCTGGTACAAATGTATCATTATTCAGCTTGACCTCTTCCTTGTTT CTTCTGTACATATACAAGTTATGGAGATATGATCATGTGCTCTTCACATACTTAATTTAG GAAGGTGTAGAAGAAGCAAGGGCCGAAACGAGCCTTGAGTGCATCCTGATGAGCATTACT TGACCTCACCATTGTTGTATTCAGCTTTCCTGGTAGCTAGGGCAGCTCTTATATATACAC CATCGGTCAACGAAGACCGGCTTCTTTGTTTTATGACAAGCTTGTACTACTAAATTAAAT CCTCTGGTGTCAAACTTTTGCTTCGAGCAGTGTTGTAACTTTGACACCAGCACATGTAAG TTAACGCTGTAAAATCCGAACTGCCATGAATTCATGGATAGAAAACAATATACAAG