- Transcript HORVU3Hr1G089130.11
- Transcript IDHORVU3Hr1G089130.11
- Gene IDHORVU3Hr1G089130
Barley RTD
Exon Structure of HORVU3Hr1G089130.11
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 627472849 | 627472793 | + |
| chr3H | 2 | 627476335 | 627476197 | + |
| chr3H | 3 | 627476767 | 627476548 | + |
| chr3H | 4 | 627476952 | 627476852 | + |
| chr3H | 5 | 627477389 | 627477102 | + |
| chr3H | 6 | 627478018 | 627477913 | + |
| chr3H | 7 | 627478248 | 627478099 | + |
| chr3H | 8 | 627479059 | 627478932 | + |
| chr3H | 9 | 627479367 | 627479237 | + |
| chr3H | 10 | 627479958 | 627479861 | + |
| chr3H | 11 | 627480848 | 627480066 | + |
| chr3H | 12 | 627481513 | 627481243 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g67420.1 | +1 | 0.0 | 568 | 281/398 (71%) | protein|lipase, putative, expressed |
| TAIR PP10 | AT1G05790 @ ARAPORT AT1G05790.1 @ TAIR |
+1 | 6e-126 | 176 | 91/186 (49%) | Symbols: | lipase class 3 family protein | chr1:1733039-1737365 FORWARD LENGTH=687 |
| BRACH PP3 | Bradi2g57770.4.p | +1 | 0.0 | 613 | 308/410 (75%) | pacid=32774684 transcript=Bradi2g57770.4 locus=Bradi2g57770 ID=Bradi2g57770.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2472 bp)
>HORVU3Hr1G089130.11 2472 150831_barley_pseudomolecules GCCGGCGCCATCGGGGCGCACGTCGACAGCGACCGCGACCTCCGGCATCTCTCGCGGCTA CGATACAATAGATGGCTTTGGTGGGCAAGGTTTGGGATGGTAATTACAGTGCTCCAATTT GTGCTGGCACTTTATTTGATGTGCATTATTGTAAAGGATTTCTCATCTGGGAAGTCGTTG AAAGAGTGTTTTTCAGGACACGGCAAGGACAACAATGACTGGAAGAATATCTTGTTAATA ATTTTTCTTGTTCTTATGTGGGTGGGAACAATAGTCCAGTGTGCCACAGGTTCCGATGTA TTAAGATGGAGGTCCTTTTATGCAACTCATGATATAGCATGGAGGGCTCACTACAGGGAG GTGTTTGATCATGGCATTCGTGAGGTTTTATGTTGTCTAGGACGGGTGAAGTACTCGAGT GTACTGGAAGATGATGATATATGTGTCGTGGCAAAACTGTTGGGCGATATTATGGCTTAT CGTGCATCTGGAACTGGCCATCTTGAGCTCATAGCAGGGTTTTCATTGTTGCAGAAATCC AAGATGTCGACGGTTGTTTCAAGAGAACAAGCAGAGGCTCCTCATGATCTCATCCAAGAG GCTATTCTGTTTCATCCATTTGCTGAAGCTGCATATACAGTTACTTTCTGCATCCTTCAC TTCGTCCCATTTCCAGTGTTTTATGTAGTATTGTTGACATGTTCTCCTTGTAGGGTCCGT TACTTGATTTTGGAAGGAATCCTCTTATGTTTCCCTGTGTTTGGCTCAATAGGCAAGGTA TTTTAACTCCATGGACTCGTGCTAGACGACCAATCCTTGAAGGAGATAATTGGTGGAGAG GGCATGCAGCGGCTTTCCTAAAGTATGTCAATGTGCCCCCAGAAGTTCTTCGGAAAGGGC GTGTTAGCCAGACAAAACGTGAGGCTGCCTACTTTATTATTGTCTTACATGACTTGAAAA CAGTAGTCATTGCCATTCGTGGAACCGAGACTCCAGAAGATGTTATAACCGATGGCTTAT GTAGGGAATGCTCTCTTACGATGGATGACTTGGATGGGCTGTTCTGATCAGTTACCCCCT CAAGTGAAGGAGGCTGTGCTCTCGTCTTTTCCACACTATGGACATGCGGGAATTATTGAA TCAGCTCGAGAATTGTACACAAAGCTTGAAGGGCAGCCCATTCATCAAGATAAGTCAGAG CTGATGACAGCTGGGTTCTTATCTTCGCTGCTCGGAGCTGGATGTGAGTGTGATGGATAC AATATTGAAATTGTTGGACATTCTTTAGGAGGTGCTGTAGCTGCACTTCTTGGTATTAGG CTATATAAACAGTTTCCAAAATTACATGTCTTTACTTATGGAGCTGCACCCTGTGTAGAT TTCGTGATAGCAGATGCATGCTCACAGTTTGTTACCAGCATTGTCCACAACGATGAATTT TCCTCAAGATTATCCATGAATTCGGTAATTAGATTACGTGGCGCTGCTATCAAAGCTCTA TCAAAGGATACTTCGCCAAATTCTACTAAAGTTGGCAAACTAGTGAGTGGCTTCACGAGC ATCAAAGGGCATGATGAACAATGCGATGTGGTTCAATTTGCTGCTCCTGGTGCTCTTCAG ACAGTCAGCGATGCAAAGCTAAGTAACGGTCAAATCTATGGAAAGAGTGTAATGCATACA GTTAGAGGTGGTGTGTTCCTCTTTGGTCAAGCAATATCTTGCTTGGTAAATACTCCAAAG CATAGAATTAGCTCCACTGCGGCAATTAAGTACGAGTTGGGGCGATCTAGAACAACGTTA ACCTATAATGGAGAAAAATTGACTGTTGCTTCCCATGGTGTTCTGGATGGTGCACCTTCT GGAGAACCTAGCGATGCATACCGAGATGGCAAGTTTCCAGAAGCTGGCTTGGATGAATCC GGAAGTAGTTACAGGTTACCTCATTCAAATGATGGTACTGAGCTCTCACCTGCTCCTGAT CACATCTGTACAACAAGTTTATCTGAAGGGCAGTCGCCAGAGGTGTACCTCCCTGGCCTC ATTATTCATATCGTTCCCATAAAAAATGGTACCTCTCCATCACGGAAGACACTTGTGACT CGTCACAAGAACAAGAGTTATAAAGCATTTGTAGCAAATCGGCAGGACTTTATGGACCTT GTTGTGACCCCTCGCATGTTCCTTGATCATCTCCCATGGAGGTGCCACTATGGCATGCAA AGGGTTATAGAAAGACGGAACCGGAACCAGCCCATTCGCAATTCATCCACCGGAGAGGAT TCTGTCTAACTGAAAACTGTTAGGCTGGTACAAATGTATCATTATTCAGCTTGACCTCTT CCTTGTTTCTTCTGTACATATACAAGTTATGGAGATATGATCATGTGCTCTTCACATACT TAATTTAGGAAGGTGTAGAAGAAGCAAGGGCCGAAACGAGCCTTGAGTGCATCCTGATGA GCATTACTTGAC