- Gene BART1_0-u23592
- Gene IDBART1_0-u23592
- Location chr3H: 627472714 - 627481980
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU3Hr1G089130 | 97.7 | + | + | 9054 | -64 | Partial-Overlap |
Transcripts from Gene BART1_0-u23592
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u23592.001 | 2949 | 2949 bp MSTRG.23592.1 MSTRG.23592 |
| BART1_0-u23592.002 | 2822 | 2822 bp MSTRG.23592.2 MSTRG.23592 |
| BART1_0-u23592.003 | 2650 | 2650 bp MSTRG.23592.3 MSTRG.23592 |
| BART1_0-u23592.004 | 2666 | 2666 bp MSTRG.23592.4 MSTRG.23592 |
| BART1_0-u23592.005 | 2552 | 2552 bp MSTRG.23592.5 MSTRG.23592 |
| BART1_0-u23592.006 | 2563 | 2563 bp MSTRG.23592.6 MSTRG.23592 |
| BART1_0-u23592.007 | 2570 | 2570 bp MSTRG.23592.7 MSTRG.23592 |
| BART1_0-u23592.008 | 2638 | 2638 bp MSTRG.23592.8 MSTRG.23592 |
| BART1_0-u23592.009 | 3256 | 3256 bp MSTRG.23592.9 MSTRG.23592 |
| BART1_0-u23592.010 | 2602 | 2602 bp MSTRG.23592.10 MSTRG.23592 |
| BART1_0-u23592.011 | 2569 | 2569 bp MSTRG.23592.11 MSTRG.23592 |
| BART1_0-u23592.012 | 2557 | 2557 bp MSTRG.23592.12 MSTRG.23592 |
| BART1_0-u23592.013 | 2523 | 2523 bp MSTRG.23592.13 MSTRG.23592 |
Exon Structure of BART1_0-u23592
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g67420.1 | +3 | 0.0 | 628 | 303/404 (75%) | protein|lipase, putative, expressed |
| TAIR PP10 | AT1G05790 @ ARAPORT AT1G05790.1 @ TAIR |
+3 | 2e-124 | 397 | 201/404 (50%) | Symbols: | lipase class 3 family protein | chr1:1733039-1737365 FORWARD LENGTH=687 |
| BRACH PP3 | Bradi2g57770.2.p | +3 | 0.0 | 741 | 348/405 (86%) | pacid=32774683 transcript=Bradi2g57770.2 locus=Bradi2g57770 ID=Bradi2g57770.2.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0006629 | lipid metabolic process |
| GO:0016021 | integral component of membrane |
| GO:0016787 | hydrolase activity |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons