- Transcript BART1_0-u23592.012
- Transcript IDBART1_0-u23592.012
- Gene IDBART1_0-u23592
Barley RTD
Exon Structure of BART1_0-u23592.012
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 627472849 | 627472826 | + |
| chr3H | 2 | 627476335 | 627476197 | + |
| chr3H | 3 | 627476767 | 627476548 | + |
| chr3H | 4 | 627476952 | 627476852 | + |
| chr3H | 5 | 627477223 | 627477119 | + |
| chr3H | 6 | 627477361 | 627477298 | + |
| chr3H | 7 | 627478018 | 627477913 | + |
| chr3H | 8 | 627478253 | 627478099 | + |
| chr3H | 9 | 627479059 | 627478932 | + |
| chr3H | 10 | 627479367 | 627479237 | + |
| chr3H | 11 | 627479958 | 627479861 | + |
| chr3H | 12 | 627480848 | 627480066 | + |
| chr3H | 13 | 627481745 | 627481243 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 1.26234 | 0.51736 | 1.04139 |
| morex | LEA | 0 | 0 | 0.753056 |
| morex | EPI | 3.00105 | 1.59623 | 0.00971585 |
| morex | ROO | 0 | 0 | 0.0139894 |
| morex | ROO2 | 0.00790892 | 0 | 0 |
| morex | NOD | 1.8454 | 0.0000133541 | 0.0000759701 |
| morex | RAC | 0.0000721746 | 0.296111 | 0.615651 |
| morex | INF1 | 0 | 0.770758 | 0 |
| morex | INF2 | 0 | 0 | 0.00000000253896 |
| morex | CAR5 | 0 | 0 | 0.00265566 |
| morex | CAR15 | 0.784731 | 0.000000118705 | 0 |
| morex | LEM | 0.0000000111656 | 0 | 0.784303 |
| morex | LOD | 1.6655 | 2.75819 | 1.51334 |
| morex | PAL | 0.0000114667 | 3.06439 | 1.43642 |
| morex | SEN | 0.0592404 | 0.945663 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g67420.1 | +1 | 0.0 | 921 | 472/720 (66%) | protein|lipase, putative, expressed |
| TAIR PP10 | AT1G05790 @ ARAPORT AT1G05790.2 @ TAIR |
+1 | 1e-92 | 297 | 150/286 (52%) | Symbols: | lipase class 3 family protein | chr1:1733996-1737365 FORWARD LENGTH=516 |
| BRACH PP3 | Bradi2g57770.2.p | +1 | 0.0 | 1042 | 532/738 (72%) | pacid=32774683 transcript=Bradi2g57770.2 locus=Bradi2g57770 ID=Bradi2g57770.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2557 bp)
>BART1_0-u23592.012 2557 150831_barley_pseudomolecules CGCGACCTCCGGCATCTCTCGCGGCTACGATACAATAGATGGCTTTGGTGGGCAAGGTTT GGGATGGTAATTACAGTGCTCCAATTTGTGCTGGCACTTTATTTGATGTGCATTATTGTA AAGGATTTCTCATCTGGGAAGTCGTTGAAAGAGTGTTTTTCAGGACACGGCAAGGACAAC AATGACTGGAAGAATATCTTGTTAATAATTTTTCTTGTTCTTATGTGGGTGGGAACAATA GTCCAGTGTGCCACAGGTTCCGATGTATTAAGATGGAGGTCCTTTTATGCAACTCATGAT ATAGCATGGAGGGCTCACTACAGGGAGGTGTTTGATCATGGCATTCGTGAGGTTTTATGT TGTCTAGGACGGGTGAAGTACTCGAGTGTACTGGAAGATGATGATATATGTGTCGTGGCA AAACTGTTGGGCGATATTATGGCTTATCGTGCATCTGGAACTGGCCATCTTGAGCTCATA GCAGAAATCCAAGATGTCGACGGTTGTTTCAAGAGAACAAGCAGAGGCTCCTCATGATCT CATCCAAGAGGCTATTCTGTTTCATCCATTTGCTGAAGCTGCATATACAGGTCCGTTACT TGATTTTGGAAGGAATCCTCTTATGTTTCCCTGTGTTTGGCTCAATAGGCAAGACGACCA ATCCTTGAAGGAGATAATTGGTGGAGAGGGCATGCAGCGGCTTTCCTAAAGTATGTCAAT GTGCCCCCAGAAGTTCTTCGGAAAGGGCGTGTTAGCCAGACAAAACGTGAGGCTGCCTAC TTTATTATTGTCTTACATGACTTGAAAACAGTAGTCATTGCCATTCGTGGAACCGAGACT CCAGAAGATGTTATAACCGATGGCTTATGTAGGGAATGCTCTCTTACGATGGATGACTTG GATGGGCTGGTCAATTCTGATCAGTTACCCCCTCAAGTGAAGGAGGCTGTGCTCTCGTCT TTTCCACACTATGGACATGCGGGAATTATTGAATCAGCTCGAGAATTGTACACAAAGCTT GAAGGGCAGCCCATTCATCAAGATAAGTCAGAGCTGATGACAGCTGGGTTCTTATCTTCG CTGCTCGGAGCTGGATGTGAGTGTGATGGATACAATATTGAAATTGTTGGACATTCTTTA GGAGGTGCTGTAGCTGCACTTCTTGGTATTAGGCTATATAAACAGTTTCCAAAATTACAT GTCTTTACTTATGGAGCTGCACCCTGTGTAGATTTCGTGATAGCAGATGCATGCTCACAG TTTGTTACCAGCATTGTCCACAACGATGAATTTTCCTCAAGATTATCCATGAATTCGGTA ATTAGATTACGTGGCGCTGCTATCAAAGCTCTATCAAAGGATACTTCGCCAAATTCTACT AAAGTTGGCAAACTAGTGAGTGGCTTCACGAGCATCAAAGGGCATGATGAACAATGCGAT GTGGTTCAATTTGCTGCTCCTGGTGCTCTTCAGACAGTCAGCGATGCAAAGCTAAGTAAC GGTCAAATCTATGGAAAGAGTGTAATGCATACAGTTAGAGGTGGTGTGTTCCTCTTTGGT CAAGCAATATCTTGCTTGGTAAATACTCCAAAGCATAGAATTAGCTCCACTGCGGCAATT AAGTACGAGTTGGGGCGATCTAGAACAACGTTAACCTATAATGGAGAAAAATTGACTGTT GCTTCCCATGGTGTTCTGGATGGTGCACCTTCTGGAGAACCTAGCGATGCATACCGAGAT GGCAAGTTTCCAGAAGCTGGCTTGGATGAATCCGGAAGTAGTTACAGGTTACCTCATTCA AATGATGGTACTGAGCTCTCACCTGCTCCTGATCACATCTGTACAACAAGTTTATCTGAA GGGCAGTCGCCAGAGGTGTACCTCCCTGGCCTCATTATTCATATCGTTCCCATAAAAAAT GGTACCTCTCCATCACGGAAGACACTTGTGACTCGTCACAAGAACAAGAGTTATAAAGCA TTTGTAGCAAATCGGCAGGACTTTATGGACCTTGTTGTGACCCCTCGCATGTTCCTTGAT CATCTCCCATGGAGGTGCCACTATGGCATGCAAAGGGTTATAGAAAGACGGAACCGGAAC CAGCCCATTCGCAATTCATCCACCGGAGAGGATTCTGTCTAACTGAAAACTGTTAGGCTG GTACAAATGTATCATTATTCAGCTTGACCTCTTCCTTGTTTCTTCTGTACATATACAAGT TATGGAGATATGATCATGTGCTCTTCACATACTTAATTTAGGAAGGTGTAGAAGAAGCAA GGGCCGAAACGAGCCTTGAGTGCATCCTGATGAGCATTACTTGACCTCACCATTGTTGTA TTCAGCTTTCCTGGTAGCTAGGGCAGCTCTTATATATACACCATCGGTCAACGAAGACCG GCTTCTTTGTTTTATGACAAGCTTGTACTACTAAATTAAATCCTCTGGTGTCAAACTTTT GCTTCGAGCAGTGTTGTAACTTTGACACCAGCACATGTAAGTTAACGCTGTAAAATCCGA ACTGCCATGAATTCATGGATAGAAAACAATATACAAG
Protein Sequence (417 aa)
>BART1_0-u23592.012 417 150831_barley_pseudomolecules MDDLDGLVNSDQLPPQVKEAVLSSFPHYGHAGIIESARELYTKLEGQPIHQDKSELMTAG FLSSLLGAGCECDGYNIEIVGHSLGGAVAALLGIRLYKQFPKLHVFTYGAAPCVDFVIAD ACSQFVTSIVHNDEFSSRLSMNSVIRLRGAAIKALSKDTSPNSTKVGKLVSGFTSIKGHD EQCDVVQFAAPGALQTVSDAKLSNGQIYGKSVMHTVRGGVFLFGQAISCLVNTPKHRISS TAAIKYELGRSRTTLTYNGEKLTVASHGVLDGAPSGEPSDAYRDGKFPEAGLDESGSSYR LPHSNDGTELSPAPDHICTTSLSEGQSPEVYLPGLIIHIVPIKNGTSPSRKTLVTRHKNK SYKAFVANRQDFMDLVVTPRMFLDHLPWRCHYGMQRVIERRNRNQPIRNSSTGEDSV