- Transcript BART1_0-u23592.010
- Transcript IDBART1_0-u23592.010
- Gene IDBART1_0-u23592
Barley RTD
Exon Structure of BART1_0-u23592.010
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 627472849 | 627472815 | + |
| chr3H | 2 | 627476335 | 627476197 | + |
| chr3H | 3 | 627476756 | 627476548 | + |
| chr3H | 4 | 627476952 | 627476852 | + |
| chr3H | 5 | 627477223 | 627477102 | + |
| chr3H | 6 | 627477389 | 627477298 | + |
| chr3H | 7 | 627478018 | 627477913 | + |
| chr3H | 8 | 627478253 | 627478099 | + |
| chr3H | 9 | 627479059 | 627478932 | + |
| chr3H | 10 | 627479367 | 627479237 | + |
| chr3H | 11 | 627479958 | 627479861 | + |
| chr3H | 12 | 627480848 | 627480066 | + |
| chr3H | 13 | 627481745 | 627481243 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.53849 | 1.88387 | 0 |
| morex | ETI | 1.3801 | 0.0000000638464 | 1.20424 |
| morex | LEA | 0.259354 | 1.86211 | 0 |
| morex | EPI | 1.16361 | 2.79471 | 3.03627 |
| morex | ROO | 0 | 0.891163 | 0 |
| morex | ROO2 | 2.50904 | 1.37458 | 1.19916 |
| morex | NOD | 1.27908 | 1.94055 | 1.79305 |
| morex | RAC | 3.8829 | 1.26557 | 1.90384 |
| morex | INF1 | 1.62254 | 0.615997 | 1.67329 |
| morex | INF2 | 1.62959 | 0.318928 | 0 |
| morex | CAR5 | 2.10969 | 0 | 0.931062 |
| morex | CAR15 | 2.46135 | 0 | 1.31817 |
| morex | LEM | 2.3597 | 2.56531 | 2.95069 |
| morex | LOD | 0.266136 | 0.000000164692 | 1.2379 |
| morex | PAL | 1.95257 | 1.47671 | 2.01416 |
| morex | SEN | 0 | 0.463072 | 0.000663241 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g67420.1 | +1 | 0.0 | 934 | 451/590 (76%) | protein|lipase, putative, expressed |
| TAIR PP10 | AT1G05790 @ ARAPORT AT1G05790.2 @ TAIR |
+1 | 6e-140 | 425 | 210/390 (54%) | Symbols: | lipase class 3 family protein | chr1:1733996-1737365 FORWARD LENGTH=516 |
| BRACH PP3 | Bradi2g57770.4.p | +1 | 0.0 | 982 | 481/603 (80%) | pacid=32774684 transcript=Bradi2g57770.4 locus=Bradi2g57770 ID=Bradi2g57770.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2602 bp)
>BART1_0-u23592.010 2602 150831_barley_pseudomolecules TCGACAGCGACCGCGACCTCCGGCATCTCTCGCGGCTACGATACAATAGATGGCTTTGGT GGGCAAGGTTTGGGATGGTAATTACAGTGCTCCAATTTGTGCTGGCACTTTATTTGATGT GCATTATTGTAAAGGATTTCTCATCTGGGAAGTCGTTGAAAGAGTGTTTTTCAGGACACG GCAAGGACAACAATGACTGGAAGAATATCTTGTTAATAATTTTTCTTGTTCTTATGTGGG TGGGAACAATAGTCCAGTGTGCCACAGGTTCCGATGTATTAAGATGGAGGTCCTTTTATG CAACTCATGATATAGCATGGAGGGCTCACTACAGGGAGGTGTTTGATCATGGCATTCGTG AGGTTTTATGTTGTCTAGGACGGGAGTGTACTGGAAGATGATGATATATGTGTCGTGGCA AAACTGTTGGGCGATATTATGGCTTATCGTGCATCTGGAACTGGCCATCTTGAGCTCATA GCAGGGTTTTCATTGTTGCAGAAATCCAAGATGTCGACGGTTGTTTCAAGAGAACAAGCA GAGGCTCCTCATGATCTCATCCAAGAGGCTATTCTGTTTCATCCATTTGCTGAAGCTGCA TATACAGGTCCGTTACTTGATTTTGGAAGGAATCCTCTTATGTTTCCCTGTGTTTGGCTC AATAGGCAAGGTATTTTAACTCCATGGACTCGTGCTAGACGACCAATCCTTGAAGGAGAT AATTGGTGGAGAGGGCATGCAGCGGCTTTCCTAAAGTATGTCAATGTGCCCCCAGAAGTT CTTCGGAAAGGGCGTGTTAGCCAGACAAAACGTGAGGCTGCCTACTTTATTATTGTCTTA CATGACTTGAAAACAGTAGTCATTGCCATTCGTGGAACCGAGACTCCAGAAGATGTTATA ACCGATGGCTTATGTAGGGAATGCTCTCTTACGATGGATGACTTGGATGGGCTGGTCAAT TCTGATCAGTTACCCCCTCAAGTGAAGGAGGCTGTGCTCTCGTCTTTTCCACACTATGGA CATGCGGGAATTATTGAATCAGCTCGAGAATTGTACACAAAGCTTGAAGGGCAGCCCATT CATCAAGATAAGTCAGAGCTGATGACAGCTGGGTTCTTATCTTCGCTGCTCGGAGCTGGA TGTGAGTGTGATGGATACAATATTGAAATTGTTGGACATTCTTTAGGAGGTGCTGTAGCT GCACTTCTTGGTATTAGGCTATATAAACAGTTTCCAAAATTACATGTCTTTACTTATGGA GCTGCACCCTGTGTAGATTTCGTGATAGCAGATGCATGCTCACAGTTTGTTACCAGCATT GTCCACAACGATGAATTTTCCTCAAGATTATCCATGAATTCGGTAATTAGATTACGTGGC GCTGCTATCAAAGCTCTATCAAAGGATACTTCGCCAAATTCTACTAAAGTTGGCAAACTA GTGAGTGGCTTCACGAGCATCAAAGGGCATGATGAACAATGCGATGTGGTTCAATTTGCT GCTCCTGGTGCTCTTCAGACAGTCAGCGATGCAAAGCTAAGTAACGGTCAAATCTATGGA AAGAGTGTAATGCATACAGTTAGAGGTGGTGTGTTCCTCTTTGGTCAAGCAATATCTTGC TTGGTAAATACTCCAAAGCATAGAATTAGCTCCACTGCGGCAATTAAGTACGAGTTGGGG CGATCTAGAACAACGTTAACCTATAATGGAGAAAAATTGACTGTTGCTTCCCATGGTGTT CTGGATGGTGCACCTTCTGGAGAACCTAGCGATGCATACCGAGATGGCAAGTTTCCAGAA GCTGGCTTGGATGAATCCGGAAGTAGTTACAGGTTACCTCATTCAAATGATGGTACTGAG CTCTCACCTGCTCCTGATCACATCTGTACAACAAGTTTATCTGAAGGGCAGTCGCCAGAG GTGTACCTCCCTGGCCTCATTATTCATATCGTTCCCATAAAAAATGGTACCTCTCCATCA CGGAAGACACTTGTGACTCGTCACAAGAACAAGAGTTATAAAGCATTTGTAGCAAATCGG CAGGACTTTATGGACCTTGTTGTGACCCCTCGCATGTTCCTTGATCATCTCCCATGGAGG TGCCACTATGGCATGCAAAGGGTTATAGAAAGACGGAACCGGAACCAGCCCATTCGCAAT TCATCCACCGGAGAGGATTCTGTCTAACTGAAAACTGTTAGGCTGGTACAAATGTATCAT TATTCAGCTTGACCTCTTCCTTGTTTCTTCTGTACATATACAAGTTATGGAGATATGATC ATGTGCTCTTCACATACTTAATTTAGGAAGGTGTAGAAGAAGCAAGGGCCGAAACGAGCC TTGAGTGCATCCTGATGAGCATTACTTGACCTCACCATTGTTGTATTCAGCTTTCCTGGT AGCTAGGGCAGCTCTTATATATACACCATCGGTCAACGAAGACCGGCTTCTTTGTTTTAT GACAAGCTTGTACTACTAAATTAAATCCTCTGGTGTCAAACTTTTGCTTCGAGCAGTGTT GTAACTTTGACACCAGCACATGTAAGTTAACGCTGTAAAATCCGAACTGCCATGAATTCA TGGATAGAAAACAATATACAAG
Protein Sequence (582 aa)
>BART1_0-u23592.010 582 150831_barley_pseudomolecules MAYRASGTGHLELIAGFSLLQKSKMSTVVSREQAEAPHDLIQEAILFHPFAEAAYTGPLL DFGRNPLMFPCVWLNRQGILTPWTRARRPILEGDNWWRGHAAAFLKYVNVPPEVLRKGRV SQTKREAAYFIIVLHDLKTVVIAIRGTETPEDVITDGLCRECSLTMDDLDGLVNSDQLPP QVKEAVLSSFPHYGHAGIIESARELYTKLEGQPIHQDKSELMTAGFLSSLLGAGCECDGY NIEIVGHSLGGAVAALLGIRLYKQFPKLHVFTYGAAPCVDFVIADACSQFVTSIVHNDEF SSRLSMNSVIRLRGAAIKALSKDTSPNSTKVGKLVSGFTSIKGHDEQCDVVQFAAPGALQ TVSDAKLSNGQIYGKSVMHTVRGGVFLFGQAISCLVNTPKHRISSTAAIKYELGRSRTTL TYNGEKLTVASHGVLDGAPSGEPSDAYRDGKFPEAGLDESGSSYRLPHSNDGTELSPAPD HICTTSLSEGQSPEVYLPGLIIHIVPIKNGTSPSRKTLVTRHKNKSYKAFVANRQDFMDL VVTPRMFLDHLPWRCHYGMQRVIERRNRNQPIRNSSTGEDSV