- Transcript BART1_0-u23592.008
- Transcript IDBART1_0-u23592.008
- Gene IDBART1_0-u23592
Barley RTD
Exon Structure of BART1_0-u23592.008
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 627472849 | 627472813 | + |
| chr3H | 2 | 627476335 | 627476197 | + |
| chr3H | 3 | 627476767 | 627476548 | + |
| chr3H | 4 | 627476952 | 627476852 | + |
| chr3H | 5 | 627477223 | 627477102 | + |
| chr3H | 6 | 627477389 | 627477298 | + |
| chr3H | 7 | 627478018 | 627477913 | + |
| chr3H | 8 | 627478253 | 627478099 | + |
| chr3H | 9 | 627479059 | 627478932 | + |
| chr3H | 10 | 627479367 | 627479216 | + |
| chr3H | 11 | 627479958 | 627479861 | + |
| chr3H | 12 | 627480848 | 627480066 | + |
| chr3H | 13 | 627481747 | 627481243 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.44255 | 0.182082 | 2.79917 |
| morex | ETI | 0.30667 | 2.03535 | 0.832984 |
| morex | LEA | 0.0000000100416 | 0.00258558 | 1.8725 |
| morex | EPI | 1.92967 | 0.776708 | 0.0000000102309 |
| morex | ROO | 0 | 1.1753 | 0.426502 |
| morex | ROO2 | 0.04383 | 0.0163183 | 0.403145 |
| morex | NOD | 0 | 0.229039 | 0.246512 |
| morex | RAC | 0 | 1.975 | 2.75022 |
| morex | INF1 | 3.7933 | 1.50835 | 2.07069 |
| morex | INF2 | 3.32574 | 1.58121 | 0 |
| morex | CAR5 | 0.0000000628752 | 1.40233 | 0.796678 |
| morex | CAR15 | 0 | 0.563423 | 0 |
| morex | LEM | 0.00000309228 | 1.08785 | 1.17408 |
| morex | LOD | 1.38669 | 0 | 1.58018 |
| morex | PAL | 2.93294 | 0.00175507 | 0.968566 |
| morex | SEN | 0.392279 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g67420.1 | +2 | 0.0 | 1046 | 513/715 (72%) | protein|lipase, putative, expressed |
| TAIR PP10 | AT1G05790 @ ARAPORT AT1G05790.1 @ TAIR |
+2 | 4e-158 | 479 | 247/516 (48%) | Symbols: | lipase class 3 family protein | chr1:1733039-1737365 FORWARD LENGTH=687 |
| BRACH PP3 | Bradi2g57770.2.p | +2 | 0.0 | 1189 | 579/728 (80%) | pacid=32774683 transcript=Bradi2g57770.2 locus=Bradi2g57770 ID=Bradi2g57770.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2638 bp)
>BART1_0-u23592.008 2638 150831_barley_pseudomolecules CGTCGACAGCGACCGCGACCTCCGGCATCTCTCGCGGCTACGATACAATAGATGGCTTTG GTGGGCAAGGTTTGGGATGGTAATTACAGTGCTCCAATTTGTGCTGGCACTTTATTTGAT GTGCATTATTGTAAAGGATTTCTCATCTGGGAAGTCGTTGAAAGAGTGTTTTTCAGGACA CGGCAAGGACAACAATGACTGGAAGAATATCTTGTTAATAATTTTTCTTGTTCTTATGTG GGTGGGAACAATAGTCCAGTGTGCCACAGGTTCCGATGTATTAAGATGGAGGTCCTTTTA TGCAACTCATGATATAGCATGGAGGGCTCACTACAGGGAGGTGTTTGATCATGGCATTCG TGAGGTTTTATGTTGTCTAGGACGGGTGAAGTACTCGAGTGTACTGGAAGATGATGATAT ATGTGTCGTGGCAAAACTGTTGGGCGATATTATGGCTTATCGTGCATCTGGAACTGGCCA TCTTGAGCTCATAGCAGGGTTTTCATTGTTGCAGAAATCCAAGATGTCGACGGTTGTTTC AAGAGAACAAGCAGAGGCTCCTCATGATCTCATCCAAGAGGCTATTCTGTTTCATCCATT TGCTGAAGCTGCATATACAGGTCCGTTACTTGATTTTGGAAGGAATCCTCTTATGTTTCC CTGTGTTTGGCTCAATAGGCAAGGTATTTTAACTCCATGGACTCGTGCTAGACGACCAAT CCTTGAAGGAGATAATTGGTGGAGAGGGCATGCAGCGGCTTTCCTAAAGTATGTCAATGT GCCCCCAGAAGTTCTTCGGAAAGGGCGTGTTAGCCAGACAAAACGTGAGGCTGCCTACTT TATTATTGTCTTACATGACTTGAAAACAGTAGTCATTGCCATTCGTGGAACCGAGACTCC AGAAGATGTTATAACCGATGGCTTATGTAGGGAATGCTCTCTTACGATGGATGACTTGGA TGGGCTGGTCAATTCTGATCAGTTACCCCCTCAAGTGAAGGAGGCTGTGCTCTCGTCTTT TCCACACTATGGACATGCGGGAATTATTGAATCAGCTCGAGAATTGTACACAAAGCTTGA AGGGCAGCCCATTCATCAAGCTAGTATGGAACTGCCTGCAGATAAGTCAGAGCTGATGAC AGCTGGGTTCTTATCTTCGCTGCTCGGAGCTGGATGTGAGTGTGATGGATACAATATTGA AATTGTTGGACATTCTTTAGGAGGTGCTGTAGCTGCACTTCTTGGTATTAGGCTATATAA ACAGTTTCCAAAATTACATGTCTTTACTTATGGAGCTGCACCCTGTGTAGATTTCGTGAT AGCAGATGCATGCTCACAGTTTGTTACCAGCATTGTCCACAACGATGAATTTTCCTCAAG ATTATCCATGAATTCGGTAATTAGATTACGTGGCGCTGCTATCAAAGCTCTATCAAAGGA TACTTCGCCAAATTCTACTAAAGTTGGCAAACTAGTGAGTGGCTTCACGAGCATCAAAGG GCATGATGAACAATGCGATGTGGTTCAATTTGCTGCTCCTGGTGCTCTTCAGACAGTCAG CGATGCAAAGCTAAGTAACGGTCAAATCTATGGAAAGAGTGTAATGCATACAGTTAGAGG TGGTGTGTTCCTCTTTGGTCAAGCAATATCTTGCTTGGTAAATACTCCAAAGCATAGAAT TAGCTCCACTGCGGCAATTAAGTACGAGTTGGGGCGATCTAGAACAACGTTAACCTATAA TGGAGAAAAATTGACTGTTGCTTCCCATGGTGTTCTGGATGGTGCACCTTCTGGAGAACC TAGCGATGCATACCGAGATGGCAAGTTTCCAGAAGCTGGCTTGGATGAATCCGGAAGTAG TTACAGGTTACCTCATTCAAATGATGGTACTGAGCTCTCACCTGCTCCTGATCACATCTG TACAACAAGTTTATCTGAAGGGCAGTCGCCAGAGGTGTACCTCCCTGGCCTCATTATTCA TATCGTTCCCATAAAAAATGGTACCTCTCCATCACGGAAGACACTTGTGACTCGTCACAA GAACAAGAGTTATAAAGCATTTGTAGCAAATCGGCAGGACTTTATGGACCTTGTTGTGAC CCCTCGCATGTTCCTTGATCATCTCCCATGGAGGTGCCACTATGGCATGCAAAGGGTTAT AGAAAGACGGAACCGGAACCAGCCCATTCGCAATTCATCCACCGGAGAGGATTCTGTCTA ACTGAAAACTGTTAGGCTGGTACAAATGTATCATTATTCAGCTTGACCTCTTCCTTGTTT CTTCTGTACATATACAAGTTATGGAGATATGATCATGTGCTCTTCACATACTTAATTTAG GAAGGTGTAGAAGAAGCAAGGGCCGAAACGAGCCTTGAGTGCATCCTGATGAGCATTACT TGACCTCACCATTGTTGTATTCAGCTTTCCTGGTAGCTAGGGCAGCTCTTATATATACAC CATCGGTCAACGAAGACCGGCTTCTTTGTTTTATGACAAGCTTGTACTACTAAATTAAAT CCTCTGGTGTCAAACTTTTGCTTCGAGCAGTGTTGTAACTTTGACACCAGCACATGTAAG TTAACGCTGTAAAATCCGAACTGCCATGAATTCATGGATAGAAAACAATATACAAGCT
Protein Sequence (739 aa)
>BART1_0-u23592.008 739 150831_barley_pseudomolecules VDSDRDLRHLSRLRYNRWLWWARFGMVITVLQFVLALYLMCIIVKDFSSGKSLKECFSGH GKDNNDWKNILLIIFLVLMWVGTIVQCATGSDVLRWRSFYATHDIAWRAHYREVFDHGIR EVLCCLGRVKYSSVLEDDDICVVAKLLGDIMAYRASGTGHLELIAGFSLLQKSKMSTVVS REQAEAPHDLIQEAILFHPFAEAAYTGPLLDFGRNPLMFPCVWLNRQGILTPWTRARRPI LEGDNWWRGHAAAFLKYVNVPPEVLRKGRVSQTKREAAYFIIVLHDLKTVVIAIRGTETP EDVITDGLCRECSLTMDDLDGLVNSDQLPPQVKEAVLSSFPHYGHAGIIESARELYTKLE GQPIHQASMELPADKSELMTAGFLSSLLGAGCECDGYNIEIVGHSLGGAVAALLGIRLYK QFPKLHVFTYGAAPCVDFVIADACSQFVTSIVHNDEFSSRLSMNSVIRLRGAAIKALSKD TSPNSTKVGKLVSGFTSIKGHDEQCDVVQFAAPGALQTVSDAKLSNGQIYGKSVMHTVRG GVFLFGQAISCLVNTPKHRISSTAAIKYELGRSRTTLTYNGEKLTVASHGVLDGAPSGEP SDAYRDGKFPEAGLDESGSSYRLPHSNDGTELSPAPDHICTTSLSEGQSPEVYLPGLIIH IVPIKNGTSPSRKTLVTRHKNKSYKAFVANRQDFMDLVVTPRMFLDHLPWRCHYGMQRVI ERRNRNQPIRNSSTGEDSV