- Transcript BART1_0-u23592.013
- Transcript IDBART1_0-u23592.013
- Gene IDBART1_0-u23592
Barley RTD
Exon Structure of BART1_0-u23592.013
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 627476335 | 627476198 | + |
| chr3H | 2 | 627476767 | 627476548 | + |
| chr3H | 3 | 627476952 | 627476852 | + |
| chr3H | 4 | 627477223 | 627477119 | + |
| chr3H | 5 | 627477389 | 627477298 | + |
| chr3H | 6 | 627478018 | 627477913 | + |
| chr3H | 7 | 627478253 | 627478099 | + |
| chr3H | 8 | 627479059 | 627478932 | + |
| chr3H | 9 | 627479367 | 627479237 | + |
| chr3H | 10 | 627479958 | 627479861 | + |
| chr3H | 11 | 627480848 | 627480066 | + |
| chr3H | 12 | 627481708 | 627481243 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.75783 | 0 | 0 |
| morex | ETI | 0.0000131508 | 1.0479 | 0.000275625 |
| morex | LEA | 0 | 0 | 1.294 |
| morex | EPI | 0.00644961 | 0.000106041 | 0 |
| morex | ROO | 0 | 0 | 0.893415 |
| morex | ROO2 | 0.0111917 | 0.000534723 | 0.368571 |
| morex | NOD | 0.000455167 | 1.29832 | 0.649233 |
| morex | RAC | 0.226763 | 3.36523 | 0.251995 |
| morex | INF1 | 0.000000017646 | 0.0748496 | 0 |
| morex | INF2 | 0 | 0.000000621406 | 0 |
| morex | CAR5 | 0 | 1.05026 | 0.717984 |
| morex | CAR15 | 0.0632475 | 0.00000000196931 | 0 |
| morex | LEM | 0.0565553 | 3.01863 | 0.0000307903 |
| morex | LOD | 0.0949948 | 0.00179165 | 0.000102039 |
| morex | PAL | 0.555822 | 0.0685119 | 0.0273203 |
| morex | SEN | 0 | 0 | 0.000000276656 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g67420.1 | +1 | 0.0 | 865 | 421/563 (75%) | protein|lipase, putative, expressed |
| TAIR PP10 | AT1G05790 @ ARAPORT AT1G05790.2 @ TAIR |
+1 | 2e-120 | 374 | 192/364 (53%) | Symbols: | lipase class 3 family protein | chr1:1733996-1737365 FORWARD LENGTH=516 |
| BRACH PP3 | Bradi2g57770.4.p | +1 | 0.0 | 909 | 449/576 (78%) | pacid=32774684 transcript=Bradi2g57770.4 locus=Bradi2g57770 ID=Bradi2g57770.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2523 bp)
>BART1_0-u23592.013 2523 150831_barley_pseudomolecules TACGATACAATAGATGGCTTTGGTGGGCAAGGTTTGGGATGGTAATTACAGTGCTCCAAT TTGTGCTGGCACTTTATTTGATGTGCATTATTGTAAAGGATTTCTCATCTGGGAAGTCGT TGAAAGAGTGTTTTTCAGGACACGGCAAGGACAACAATGACTGGAAGAATATCTTGTTAA TAATTTTTCTTGTTCTTATGTGGGTGGGAACAATAGTCCAGTGTGCCACAGGTTCCGATG TATTAAGATGGAGGTCCTTTTATGCAACTCATGATATAGCATGGAGGGCTCACTACAGGG AGGTGTTTGATCATGGCATTCGTGAGGTTTTATGTTGTCTAGGACGGGTGAAGTACTCGA GTGTACTGGAAGATGATGATATATGTGTCGTGGCAAAACTGTTGGGCGATATTATGGCTT ATCGTGCATCTGGAACTGGCCATCTTGAGCTCATAGCAGAAATCCAAGATGTCGACGGTT GTTTCAAGAGAACAAGCAGAGGCTCCTCATGATCTCATCCAAGAGGCTATTCTGTTTCAT CCATTTGCTGAAGCTGCATATACAGGTCCGTTACTTGATTTTGGAAGGAATCCTCTTATG TTTCCCTGTGTTTGGCTCAATAGGCAAGGTATTTTAACTCCATGGACTCGTGCTAGACGA CCAATCCTTGAAGGAGATAATTGGTGGAGAGGGCATGCAGCGGCTTTCCTAAAGTATGTC AATGTGCCCCCAGAAGTTCTTCGGAAAGGGCGTGTTAGCCAGACAAAACGTGAGGCTGCC TACTTTATTATTGTCTTACATGACTTGAAAACAGTAGTCATTGCCATTCGTGGAACCGAG ACTCCAGAAGATGTTATAACCGATGGCTTATGTAGGGAATGCTCTCTTACGATGGATGAC TTGGATGGGCTGGTCAATTCTGATCAGTTACCCCCTCAAGTGAAGGAGGCTGTGCTCTCG TCTTTTCCACACTATGGACATGCGGGAATTATTGAATCAGCTCGAGAATTGTACACAAAG CTTGAAGGGCAGCCCATTCATCAAGATAAGTCAGAGCTGATGACAGCTGGGTTCTTATCT TCGCTGCTCGGAGCTGGATGTGAGTGTGATGGATACAATATTGAAATTGTTGGACATTCT TTAGGAGGTGCTGTAGCTGCACTTCTTGGTATTAGGCTATATAAACAGTTTCCAAAATTA CATGTCTTTACTTATGGAGCTGCACCCTGTGTAGATTTCGTGATAGCAGATGCATGCTCA CAGTTTGTTACCAGCATTGTCCACAACGATGAATTTTCCTCAAGATTATCCATGAATTCG GTAATTAGATTACGTGGCGCTGCTATCAAAGCTCTATCAAAGGATACTTCGCCAAATTCT ACTAAAGTTGGCAAACTAGTGAGTGGCTTCACGAGCATCAAAGGGCATGATGAACAATGC GATGTGGTTCAATTTGCTGCTCCTGGTGCTCTTCAGACAGTCAGCGATGCAAAGCTAAGT AACGGTCAAATCTATGGAAAGAGTGTAATGCATACAGTTAGAGGTGGTGTGTTCCTCTTT GGTCAAGCAATATCTTGCTTGGTAAATACTCCAAAGCATAGAATTAGCTCCACTGCGGCA ATTAAGTACGAGTTGGGGCGATCTAGAACAACGTTAACCTATAATGGAGAAAAATTGACT GTTGCTTCCCATGGTGTTCTGGATGGTGCACCTTCTGGAGAACCTAGCGATGCATACCGA GATGGCAAGTTTCCAGAAGCTGGCTTGGATGAATCCGGAAGTAGTTACAGGTTACCTCAT TCAAATGATGGTACTGAGCTCTCACCTGCTCCTGATCACATCTGTACAACAAGTTTATCT GAAGGGCAGTCGCCAGAGGTGTACCTCCCTGGCCTCATTATTCATATCGTTCCCATAAAA AATGGTACCTCTCCATCACGGAAGACACTTGTGACTCGTCACAAGAACAAGAGTTATAAA GCATTTGTAGCAAATCGGCAGGACTTTATGGACCTTGTTGTGACCCCTCGCATGTTCCTT GATCATCTCCCATGGAGGTGCCACTATGGCATGCAAAGGGTTATAGAAAGACGGAACCGG AACCAGCCCATTCGCAATTCATCCACCGGAGAGGATTCTGTCTAACTGAAAACTGTTAGG CTGGTACAAATGTATCATTATTCAGCTTGACCTCTTCCTTGTTTCTTCTGTACATATACA AGTTATGGAGATATGATCATGTGCTCTTCACATACTTAATTTAGGAAGGTGTAGAAGAAG CAAGGGCCGAAACGAGCCTTGAGTGCATCCTGATGAGCATTACTTGACCTCACCATTGTT GTATTCAGCTTTCCTGGTAGCTAGGGCAGCTCTTATATATACACCATCGGTCAACGAAGA CCGGCTTCTTTGTTTTATGACAAGCTTGTACTACTAAATTAAATCCTCTGGTGTCAAACT TTTGCTTCGAGCAGTGTTGTAACTTTGACACCAGCACATGTAAGTTAACGCTGTAAAATC CGA
Protein Sequence (558 aa)
>BART1_0-u23592.013 558 150831_barley_pseudomolecules MSTVVSREQAEAPHDLIQEAILFHPFAEAAYTGPLLDFGRNPLMFPCVWLNRQGILTPWT RARRPILEGDNWWRGHAAAFLKYVNVPPEVLRKGRVSQTKREAAYFIIVLHDLKTVVIAI RGTETPEDVITDGLCRECSLTMDDLDGLVNSDQLPPQVKEAVLSSFPHYGHAGIIESARE LYTKLEGQPIHQDKSELMTAGFLSSLLGAGCECDGYNIEIVGHSLGGAVAALLGIRLYKQ FPKLHVFTYGAAPCVDFVIADACSQFVTSIVHNDEFSSRLSMNSVIRLRGAAIKALSKDT SPNSTKVGKLVSGFTSIKGHDEQCDVVQFAAPGALQTVSDAKLSNGQIYGKSVMHTVRGG VFLFGQAISCLVNTPKHRISSTAAIKYELGRSRTTLTYNGEKLTVASHGVLDGAPSGEPS DAYRDGKFPEAGLDESGSSYRLPHSNDGTELSPAPDHICTTSLSEGQSPEVYLPGLIIHI VPIKNGTSPSRKTLVTRHKNKSYKAFVANRQDFMDLVVTPRMFLDHLPWRCHYGMQRVIE RRNRNQPIRNSSTGEDSV