Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G089130.23

ChromosomeExonStartStopDirection
chr3H1627476335627476201+
chr3H2627476767627476548+
chr3H3627476952627476852+
chr3H4627477223627477102+
chr3H5627477389627477298+
chr3H6627478018627477913+
chr3H7627478253627478099+
chr3H8627479059627478932+
chr3H9627479367627479237+
chr3H10627479958627479919+
chr3H11627480848627480066+
chr3H12627481745627481243+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g67420.1 +3 0.0 635 303/397 (76%) protein|lipase, putative, expressed
TAIR PP10 AT1G05790 @ ARAPORT
AT1G05790.1 @ TAIR		 +3 4e-128 399 201/397 (51%) Symbols: | lipase class 3 family protein | chr1:1733039-1737365 FORWARD LENGTH=687
BRACH PP3 Bradi2g57770.2.p +3 0.0 748 348/398 (87%) pacid=32774683 transcript=Bradi2g57770.2 locus=Bradi2g57770 ID=Bradi2g57770.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2516 bp)

>HORVU3Hr1G089130.23 2516 150831_barley_pseudomolecules
GATACAATAGATGGCTTTGGTGGGCAAGGTTTGGGATGGTAATTACAGTGCTCCAATTTG
TGCTGGCACTTTATTTGATGTGCATTATTGTAAAGGATTTCTCATCTGGGAAGTCGTTGA
AAGAGTGTTTTTCAGGACACGGCAAGGACAACAATGACTGGAAGAATATCTTGTTAATAA
TTTTTCTTGTTCTTATGTGGGTGGGAACAATAGTCCAGTGTGCCACAGGTTCCGATGTAT
TAAGATGGAGGTCCTTTTATGCAACTCATGATATAGCATGGAGGGCTCACTACAGGGAGG
TGTTTGATCATGGCATTCGTGAGGTTTTATGTTGTCTAGGACGGGTGAAGTACTCGAGTG
TACTGGAAGATGATGATATATGTGTCGTGGCAAAACTGTTGGGCGATATTATGGCTTATC
GTGCATCTGGAACTGGCCATCTTGAGCTCATAGCAGGGTTTTCATTGTTGCAGAAATCCA
AGATGTCGACGGTTGTTTCAAGAGAACAAGCAGAGGCTCCTCATGATCTCATCCAAGAGG
CTATTCTGTTTCATCCATTTGCTGAAGCTGCATATACAGGTCCGTTACTTGATTTTGGAA
GGAATCCTCTTATGTTTCCCTGTGTTTGGCTCAATAGGCAAGGTATTTTAACTCCATGGA
CTCGTGCTAGACGACCAATCCTTGAAGGAGATAATTGGTGGAGAGGGCATGCAGCGGCTT
TCCTAAAGTATGTCAATGTGCCCCCAGAAGTTCTTCGGAAAGGGCGTGTTAGCCAGACAA
AACGTGAGGCTGCCTACTTTATTATTGTCTTACATGACTTGAAAACAGTAGTCATTGCCA
TTCGTGGAACCGAGACTCCAGAAGATGTTATAACCGATGGCTTATGTAGGGAATGCTCTC
TTACGATGGATGACTTGGATGGGCTGGTCAATTCTGATCAGTTACCCCCTCAAGTGAAGG
AGGCTGTGCTCTCGTCTTTTCCACACTATGGACATGCGGGAATTATTGAATCAGCTCGAG
AATTGTACACAAAGCTTGAAGGGCAGCCCATTCATCAAGATAAGTCAGAGCTGATGACAG
CTGGGTTCTTATCTTCGCTGCTCGGAGCTGGATGTGAGTGTGATGGATACAATATTGAAA
TTGTTGGACATTCTTTAGGAGGTGCTGTAGCTGCACTTCTTGGTATTAGGATTTCGTGAT
AGCAGATGCATGCTCACAGTTTGTTACCAGCATTGTCCACAACGATGAATTTTCCTCAAG
ATTATCCATGAATTCGGTAATTAGATTACGTGGCGCTGCTATCAAAGCTCTATCAAAGGA
TACTTCGCCAAATTCTACTAAAGTTGGCAAACTAGTGAGTGGCTTCACGAGCATCAAAGG
GCATGATGAACAATGCGATGTGGTTCAATTTGCTGCTCCTGGTGCTCTTCAGACAGTCAG
CGATGCAAAGCTAAGTAACGGTCAAATCTATGGAAAGAGTGTAATGCATACAGTTAGAGG
TGGTGTGTTCCTCTTTGGTCAAGCAATATCTTGCTTGGTAAATACTCCAAAGCATAGAAT
TAGCTCCACTGCGGCAATTAAGTACGAGTTGGGGCGATCTAGAACAACGTTAACCTATAA
TGGAGAAAAATTGACTGTTGCTTCCCATGGTGTTCTGGATGGTGCACCTTCTGGAGAACC
TAGCGATGCATACCGAGATGGCAAGTTTCCAGAAGCTGGCTTGGATGAATCCGGAAGTAG
TTACAGGTTACCTCATTCAAATGATGGTACTGAGCTCTCACCTGCTCCTGATCACATCTG
TACAACAAGTTTATCTGAAGGGCAGTCGCCAGAGGTGTACCTCCCTGGCCTCATTATTCA
TATCGTTCCCATAAAAAATGGTACCTCTCCATCACGGAAGACACTTGTGACTCGTCACAA
GAACAAGAGTTATAAAGCATTTGTAGCAAATCGGCAGGACTTTATGGACCTTGTTGTGAC
CCCTCGCATGTTCCTTGATCATCTCCCATGGAGGTGCCACTATGGCATGCAAAGGGTTAT
AGAAAGACGGAACCGGAACCAGCCCATTCGCAATTCATCCACCGGAGAGGATTCTGTCTA
ACTGAAAACTGTTAGGCTGGTACAAATGTATCATTATTCAGCTTGACCTCTTCCTTGTTT
CTTCTGTACATATACAAGTTATGGAGATATGATCATGTGCTCTTCACATACTTAATTTAG
GAAGGTGTAGAAGAAGCAAGGGCCGAAACGAGCCTTGAGTGCATCCTGATGAGCATTACT
TGACCTCACCATTGTTGTATTCAGCTTTCCTGGTAGCTAGGGCAGCTCTTATATATACAC
CATCGGTCAACGAAGACCGGCTTCTTTGTTTTATGACAAGCTTGTACTACTAAATTAAAT
CCTCTGGTGTCAAACTTTTGCTTCGAGCAGTGTTGTAACTTTGACACCAGCACATGTAAG
TTAACGCTGTAAAATCCGAACTGCCATGAATTCATGGATAGAAAACAATATACAAG