- Transcript HORVU3Hr1G089130.32
- Transcript IDHORVU3Hr1G089130.32
- Gene IDHORVU3Hr1G089130
Barley RTD
Exon Structure of HORVU3Hr1G089130.32
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 627478248 | 627478182 | + |
| chr3H | 2 | 627479059 | 627478932 | + |
| chr3H | 3 | 627479367 | 627479237 | + |
| chr3H | 4 | 627479958 | 627479861 | + |
| chr3H | 5 | 627480850 | 627480066 | + |
| chr3H | 6 | 627481751 | 627481243 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g67420.1 | +3 | 0.0 | 546 | 271/385 (70%) | protein|lipase, putative, expressed |
| TAIR PP10 | AT1G05790 @ ARAPORT AT1G05790.2 @ TAIR |
+3 | 5e-49 | 177 | 91/186 (49%) | Symbols: | lipase class 3 family protein | chr1:1733996-1737365 FORWARD LENGTH=516 |
| BRACH PP3 | Bradi2g57770.2.p | +3 | 0.0 | 590 | 295/382 (77%) | pacid=32774683 transcript=Bradi2g57770.2 locus=Bradi2g57770 ID=Bradi2g57770.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1718 bp)
>HORVU3Hr1G089130.32 1718 150831_barley_pseudomolecules AGAAGATGTTATAACCGATGGCTTATGTAGGGAATGCTCTCTTACGATGGATGACTTGGA TGGGCTGTTCTGATCAGTTACCCCCTCAAGTGAAGGAGGCTGTGCTCTCGTCTTTTCCAC ACTATGGACATGCGGGAATTATTGAATCAGCTCGAGAATTGTACACAAAGCTTGAAGGGC AGCCCATTCATCAAGATAAGTCAGAGCTGATGACAGCTGGGTTCTTATCTTCGCTGCTCG GAGCTGGATGTGAGTGTGATGGATACAATATTGAAATTGTTGGACATTCTTTAGGAGGTG CTGTAGCTGCACTTCTTGGTATTAGGCTATATAAACAGTTTCCAAAATTACATGTCTTTA CTTATGGAGCTGCACCCTGTGTAGATTTCGTGATAGCAGATGCATGCTCACAGTTTGTTA CCAGCATTGTCCACAACGATGAATTTTCCTCAAGATTATCCATGAATTCGGTAATTAGAT TACGTGGCGCTGCTATCAAAGCTCTATCAAAGGATACTTCGCCAAATTCTACTAAAGTTG GCAAACTAGTGAGTGGCTTCACGAGCATCAAAGGGCATGATGAACAATGCGATGTGGTTC AATTTGCTGCTCCTGGTGCTCTTCAGACAGTCAGCGATGCAAAGCTAAGTAACGGTCAAA TCTATGGAAAGAGTGTAATGCATACAGTTAGAGGTGGTGTGTTCCTCTTTGGTCAAGCAA TATCTTGCTTGGTAAATACTCCAAAGCATAGAATTAGCTCCACTGCGGCAATTAAGTACG AGTTGGGGCGATCTAGAACAACGTTAACCTATAATGGAGAAAAATTGACTGTTGCTTCCC ATGGTGTTCTGGATGGTGCACCTTCTGGAGAACCTAGCGATGCATACCGAGATGGCAAGT TTCCAGAAGCTGGCTTGGATGAATCCGGAAGTAGTTACAGGTTACCTCATTCAAATGATG GTACTGAGCTCTCACCTGCTCCTGATCACATCTGTACAACAAGTTTATCTGAAGGGCAGT CGCCAGAGGTGTACCTCCCTGGCCTCATTATTCATATCGTTCCCATAAAAAATGGTACCT CTCCATCACGGAAGACACTTGTGACTCGTCACAAGAACAAGAGTTATAAAGCATTTGTAG CAAATCGGCAGGACTTTATGGACCTTGTTGTGACCCCTCGCATGTTCCTTGATCATCTCC CATGGAGGTGTGCCACTATGGCATGCAAAGGGTTATAGAAAGACGGAACCGGAACCAGCC CATTCGCAATTCATCCACCGGAGAGGATTCTGTCTAACTGAAAACTGTTAGGCTGGTACA AATGTATCATTATTCAGCTTGACCTCTTCCTTGTTTCTTCTGTACATATACAAGTTATGG AGATATGATCATGTGCTCTTCACATACTTAATTTAGGAAGGTGTAGAAGAAGCAAGGGCC GAAACGAGCCTTGAGTGCATCCTGATGAGCATTACTTGACCTCACCATTGTTGTATTCAG CTTTCCTGGTAGCTAGGGCAGCTCTTATATATACACCATCGGTCAACGAAGACCGGCTTC TTTGTTTTATGACAAGCTTGTACTACTAAATTAAATCCTCTGGTGTCAAACTTTTGCTTC GAGCAGTGTTGTAACTTTGACACCAGCACATGTAAGTTAACGCTGTAAAATCCGAACTGC CATGAATTCATGGATAGAAAACAATATACAAGCTACTG