barSeed - Barley Seed Development Database

Probe CUST_7897_PI390587928

Source Contig U35_444

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7897_PI390587928	Hv_44K_v2	CTGAGTTGTACACTTGTACTACCAATGATGTAAATTACGAGAATTTTGTGCAAAAGAACC	907	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32563.1	302	2e-24	28 - 87	100	60 / 60	minus	ABC00006 ABC00347 ABC00432 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00960 ABC25177 ABC26749 ABC32758 ABC53022
JLOC1	JLOC1_21215.1	303	8e-25	28 - 87	100	60 / 60	minus
Harvest35	U35_444	996	3e-25	908 - 967	100	60 / 60	plus

Contig Sequence (996 bp)

>U35_444 996 Hv_44K_v2
ATCTCCACACTCACTCATCTCCTTTAGAACCCATAGAGCTGACACTTTTCTTAGCTTTCC
AATGGCGGCAGCCACCATGTCCCTCTCCTCCTCGACCTTTGCCGGCAAGGCGGTGAAGAA
CGTACCATCTTTGGCTCTCTTTGGCGAGGCCCGAGTCACCATGCGCAAGACCGCAGCAAA
GGCAAAGCAGGTTTCCTCCGGTAGCCCATGGTACGGTGCTGACCGTGTGCTCTACCTCGG
CCCACTCTCCGGTGAGCCCCCGAGCTACCTCACTGGCGAGTTCCCTGGCGACTATGGTTG
GGACACTGCCGGACTTTCAGCTGATCCTGAGACCTTCGCCAAGAACCGGGAGCTGGAGGT
GATCCATTGCCGTTGGGCTATGCTCGGGGCACTTGGTTGTGTCTTCCCTGAGTTGCTCGC
CCGCAATGGCGTCAACTTCGGTGAGGTTGTTTGGTTCAAGGCTGGCTCCCAAATCTTTAG
TAAAGGTGGTCTTGACTACCTTGGCAACCCAAGCCTCGTCCACGCGCAAAGCATCCTAGC
TATCTGGGCATGCCAGGTGGTGCTCATGGGTGCCGTCGAGGGGTACCGCATTGCCGGCAG
CCCACTCGGTGAGATCGTGGACCCACTCTACCCAGGCGGCAGCTTCGACCCTCTTGGCCT
GGCTGAAGACCCCGAGGCATTCGCCGAGCTTAAGGTAAAGGAGATCAAGAACGGTCGCCT
CGCCATGTTCTCAATGTTTGGCCTCTTTGTCCAAGCTATCGTCACGGGCAAGGGCCCACT
CGAGAACCTCGCTGACCACATCGCCGACCCCGTCAACAACAATGCATGGGCGTTCGCCAC
CAACTTTGTCCCCGGCAAGTAAGGTGTCTTGAGACTATGCCCACCATGAGGCGTGGTGTC
CTGTGGTCTGAGTTGTACACTTGTACTACCAATGATGTAAATTACGAGAATTTTGTGCAA
AAGAACCGTTTGATTTATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_444 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52240.1	266	5e-167	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi4g07380.1	322	2e-178
Arabidopsis v10	AT2G34420.1	265	3e-155	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light harvesting complex gene B1B2 \| chr2:14522716-14523513 REVERSE LENGTH=265