barSeed - Barley Seed Development Database

Probe CUST_6650_PI390587928

Source Contig U35_16600

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6650_PI390587928	Hv_44K_v2	TCCCGTGGTTGAAAAACTTCCACCACGAGCAGATGCAAGAGAAAATTGTTGAGGCAACAA	812	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251482.1	1651	2e-24	794 - 853	100	60 / 60	plus	ABC01965 ABC01966 ABC01968 ABC01972 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
MLOC	MLOC_32425.1	332	7e-23	86 - 145	98	59 / 60	plus	ABC01966
MLOC	MLOC_28504.1	355	7e-23	84 - 143	98	59 / 60	plus	ABC01966
MLOC	MLOC_27530.1	194	3e-21	63 - 122	97	58 / 60	minus	ABC01966
JLOC1	JLOC1_21151.1	302	4e-23	67 - 126	98	59 / 60	plus
Harvest21	ABC01974	889	6e-22	813 - 872	97	58 / 60	plus
Harvest21	ABC01966	1848	6e-22	1004 - 1063	97	58 / 60	plus	ABC01966
Harvest35	U35_16600	872	3e-25	813 - 872	100	60 / 60	plus

Contig Sequence (872 bp)

>U35_16600 872 Hv_44K_v2
ATCATCTTCGCTCACAATCTCCGAAGTTTGGGGTGGAGACAGATCACTATATATGTTAGT
CGTGTTATATCAGAAATACAGGTAATTTGGGGGAGATAGATAGTTATTGAGTCTGTGTTC
CTGAACTGAGAGTAGCAGTCTCCTGAAGCAAAGCAGATTGTGTTTTGATTGTTCAGATTC
AGGCCAGACCACGGAGTAGAATTCTCATGTCAATTGCTACTCAAGCATAATTAATCACTA
CTTCCATCTTATGTTATGCAATTGTGTGTAAGATTTAATTGTTCAGGTTCAGGCCAGAGC
ACCGGGTAGTCTCCTACAAAAACTTGGCGATTGTGTGTAAGATTTAATTGTTCAGATTCA
GGCCAGAGCACCGGGTAGTCTCCTACAAAAACTTGGCGATGTCCATGGTTCAGGTTCGAA
CCAGCATGAAAGGAAACATCTAATTGGGCTGATTTATGTTCTGTGCTACACAGATGCAGT
GCTCCGGCAAGCGGATATGCTGGTAAAAGTGTGCGCTGTTCATGTGTTGTGCTGCAAAAA
CAGGAGAGTTCATATGATAGTTTTGTCGCACAACGGGATTCGATGCTTGTCTTGTTGCGA
CCCAACCAGGCGCAGCTAACTCTAGCTGACACCGCGGATGCCGGTGCCTCAATGGATCTT
CCACGACCTCCTTGGCGAGGTGACGCCTCCTAGCCACTCTCCACCGCGCGGACGGGATGG
TCGGCCTCGGCTACAGATATCAAAGGTTGACAAATGGAAAGTATCTCGTGAAGATAAAAT
TAAATTCTCTCATCGAACTATACACTTTCTGCTCCCGTGGTTGAAAAACTTCCACCACGA
GCAGATGCAAGAGAAAATTGTTGAGGCAACAA

Homology of Contig U35_16600 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None