- Probe CUST_5116_PI390587928
- Source Contig U35_38416
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5116_PI390587928 | Hv_44K_v2 | AACAATCGAGAATAAGATGATGATGTACAGGCTGAGCCGCAAGATTGTCGACAAGTCCGA | 413 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252912.1 | 2576 | 7e-23 | 1013 - 1072 | 98 | 59 / 60 | plus | ABC01965 ABC01966 ABC01968 ABC01971 ABC01977 ABC02389 ABC09455 ABC11496 ABC12720 ABC24152 ABC32938 ABC38666 ABC41020 ABC43517 ABC49701 |
| Harvest21 | ABC34377 | 563 | 3e-25 | 414 - 473 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38416 | 563 | 3e-25 | 414 - 473 | 100 | 60 / 60 | plus |
Contig Sequence (563 bp)
>U35_38416 563 Hv_44K_v2 GCGCGGCCAAGCCGGGGCTACTGTTGTCGACGGTGAGCACCCTGGACACGCTCGGCCTCG ACATCCAGAAGTGCGTCGTCAGCTGCTTCAACGACTTCGCCATGCACACATCCTGCTCCG AGATGTAGAGGGAGATGATGAGCACGGACGCCATCAAGCAGGAGTTGTTCAAGAATGCCT GCTACGGAGGCGGCTTCTTGTAGAGAGACGAGCAAGAAGTAGCACCATGACCACCACCAC CATGATTCCATGACCAGCAGGAGAAGCAGGAAGGATAATAAAGTAGAAGTAGTTGTAGCT GTAGCAGGAGCAGTTGGATGTAGGTGAAGGAAAAGAGATTAATCTTGAGGAACACTGCCC AAGATGGAAGCTGCTGCAGCAATGCATCAGAGAGAGAGGGAGTTCTATGAGGTAACAATC GAGAATAAGATGATGATGTACAGGCTGAGCCGCAAGATTGTCGACAAGTCCGAGGGGCCC AAGGATGCAAAATGGATCTTTGTNGTGAGCACAACGAAAATTCTGTACATAGGCTCGAAA AGCAAAGGGGACATTTCAGCACT
Homology of Contig U35_38416 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |