barSeed - Barley Seed Development Database

Probe CUST_5030_PI390587928

Source Contig U35_521

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5030_PI390587928	Hv_44K_v2	CGTTGTGTTGTCCAAGTTGTAATACCATGATGTAAATTAGAGGATTCGATTGTCTAAGAA	634	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250272.1	1007	7e-23	907 - 967	98	60 / 61	plus	ABC00006 ABC00194 ABC00418 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC32758 ABC48253 ABC53013
Harvest21	ABC01012	700	3e-25	7 - 66	100	60 / 60	minus	ABC01012
Harvest21	ABC00936	964	1e-23	884 - 944	98	60 / 61	plus
Harvest35	U35_521	700	3e-25	635 - 694	100	60 / 60	plus
Harvest35	U35_395	1020	1e-23	922 - 982	98	60 / 61	plus

Contig Sequence (700 bp)

>U35_521 700 Hv_44K_v2
GGAGCACACAGACCAGGACCTCCATCGATCAGAATGGCCTCAACCACCATGTCGCTCTCT
TCCCAAGCCTTTGCCGGCAAGGCAGTGAAGAACTTGCCATCATCGTCTGTTTTTGGTGAG
GCTCGCGTCACCATGCGCAAAACGGCGGCAAAGGCCAAGCAGGTTGCCTCCGGCAGCCCG
TGGTACGGCTCTGACCGTGTGCTCTACCTCGGCCCGCTTTCTGGTGAGCCCCCGAGCTAC
CTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACTGCTGGGTTGTCTGCTGACCCC
GAGACCTTCGCCAAGAACCGCGAGCTGGAGGTGATCCACTGCCGTTGGGCCATGCTTGGA
GCGCTCGGCTGCGTCTTCCCCGAGTTGCTGGCCCGAAACGGCGTGAAGTTCGGTGAGGCT
GTTTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGCGGCCTGGACTACCTTGGCAAC
CCAAGCCATCGTCACCGGCAAGGGTCCACTCGAGAACCTCGCTGACCATCTCGCCGACCC
CGTCAACAACAATGCATGGGCATTCGCCACCAACTTCGTTCCCGGCAAGTAAGGTGTGTA
TGTGTGTGTGCACGGCGCTTGCGGTGAAGTGTGGCGTTGTGTTGTCCAAGTTGTAATACC
ATGATGTAAATTAGAGGATTCGATTGTCTAAGAAAAAAAA

Homology of Contig U35_521 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g41710.1	262	1e-89	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi4g07380.1	322	3e-102
Arabidopsis v10	AT2G34420.1	265	3e-87	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light harvesting complex gene B1B2 \| chr2:14522716-14523513 REVERSE LENGTH=265