barSeed - Barley Seed Development Database

Probe CUST_39515_PI390587928

Source Contig U35_13919

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39515_PI390587928	Hv_44K_v2	GCGCCATTGTATCTCTGATTTCTGTGGGAATCTTAGTAGTTCTCTTGTTCTATCAAAAAA	591	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251986.1	744	3e-21	604 - 657	100	54 / 54	plus	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584 ABC44597
JLOC1	JLOC1_11955.1	378	6e-21	218 - 270	100	53 / 53	plus
Harvest21	ABC00145	662	1e-23	592 - 652	98	60 / 61	plus	ABC00145
Harvest35	U35_13919	684	3e-25	592 - 651	100	60 / 60	plus

Contig Sequence (684 bp)

>U35_13919 684 Hv_44K_v2
GCACACCTCGAGACACCTCGTCGCCGGAGAAGCAGCAATGGCCGGAAGGAAGGGCGGCGA
GAGGAAGAAGGCGGTGACCCGGTCCGTGAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCAT
CGGGCGCTACCTCAAGAAGGGCCGCTACGCCCAGCGCGTCGGCTCCGGCGCCCCCGTCTA
CCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGCTGCTGGAGCTCGCCGGCAACGCGGC
CAAGGACAACAAGAAGACGCGCATCATCCCGCGACACTTGCTGCTCGCCGTCCGCAACGA
CCAGGAGCTCGGCAGGCTGCTCGCCGGTGTCACCATCGCCCACGGCGGCGTCATCCCCAA
CATCAACTCCGTGCTGCTCCCCAAGAAGTCCCCCGCCGCCGCCGAGAAGGAGGCCATCAA
GTCGCCCAAGAAGAAGGCCGCCACCAAGTCTCCCAAGAAGAAGGCCGCAGCCACCAAGGA
GTAGCCGTCCCCGTGGACATAGCCTAGCCAGTGTGTAATCTGTTCCATTTCTCATGGACA
ATATGACTAGTCTGTAGGTAGCTGCCCTTTTGTCAGATTCGTCGAGCAAGAGCGCCATTG
TATCTCTGATTTCTGTGGGAATCTTAGTAGTTCTCTTGTTCTATCAAAAAAAAAAAAATG
GCTGTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_13919 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g28560.1	155	7e-51
Arabidopsis v10	None