barSeed - Barley Seed Development Database

Probe CUST_2914_PI390587928

Source Contig U35_486

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2914_PI390587928	Hv_44K_v2	ATTACGAGAGTTTTGTGCAAAAGCAATGCAAGATTTGTCGGGCTTGAATGTTGTAAAAAA	649	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252077.1	1014	3e-22	954 - 1009	100	56 / 56	plus	ABC00006 ABC00347 ABC00422 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00960 ABC25177 ABC32758 ABC48253 ABC53022
Harvest21	ABC00424	1024	5e-23	925 - 980	100	56 / 56	plus
Harvest21	ABC00347	685	2e-21	577 - 632	98	55 / 56	plus	ABC00347
Harvest35	U35_486	750	3e-25	650 - 709	100	60 / 60	plus
Harvest35	U35_450	1070	2e-21	966 - 1021	98	55 / 56	plus

Contig Sequence (750 bp)

>U35_486 750 Hv_44K_v2
GGACACTGCAGGACTTTCGGCTGACCCCGAGACCTTCTCCAAGAATCGGGAGCTGGAAGT
GATCCATTGCCGTTGGGCTATGCTTGGGGCACTTGGTTGTGTCTTCCCTGAGTTGCTCGC
CCGCAACGGCGTCAAGTTTGGAGAGGCCGTTTGGTTCAAGGCCGGCTCCCAGATCTTTAG
TGAGGGTGGTCTCGACTACCTAGGCAACCCCAGCCTTGTGCACGCGCAAAGCATCCTAGC
TATCTGGGCATGCCAGGTTGTGCTCATGGGTGCCGTCGAGGGGTACCGTGTTGCTGGCGG
CCCACTCGGCGAGATCGTCGACCCACTATATCCAGGAGGGAGCTTCGACCCTCTTGGCCT
AGCCGACGACCCCGAGGCATTCGCTGAGCTCAAGGTAAAGGAGGTCAAGAACGGTCGCCT
CGCCATGTTCTCAATGTTCGGCTTCTTTGTCCAAGCTATCGTCACAGGCAAAGGCCCACT
TGAGAACCTCGCTGACCACATCGCTGACCCCATCAACAACAATGCATGGGCGTTTGCCAC
CAACTTTGTCCCCGGCAAGTAAGATGTGCCTTGAAGAATTTTTATTTGAAGATTGTGCAT
GCCATGAAGCATGTTGTTGTGCAATCTGAGTTGTACTACCATGATGTAAATTACGAGAGT
TTTGTGCAAAAGCAATGCAAGATTTGTCGGGCTTGAATGTTGTAAAAAAAAAAAAAAAAA
ATCGTTCTGATCACAATCCATAAAACAGAT

Homology of Contig U35_486 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52240.1	266	1e-131	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi2g16290.1	264	2e-133
Arabidopsis v10	AT2G34420.1	265	8e-123	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light harvesting complex gene B1B2 \| chr2:14522716-14523513 REVERSE LENGTH=265