barSeed - Barley Seed Development Database

Probe CUST_27897_PI390587928

Source Contig U35_8239

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27897_PI390587928	Hv_44K_v2	CAGTCAGCTAATTCTCTTATACTAACACACGGAATTCATTCATCGACTTTATTTTTTCCG	538	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38467.1	1710	2e-24	333 - 392	100	60 / 60	minus	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597
MLOC	MLOC_38467.2	1688	2e-24	237 - 296	100	60 / 60	minus	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597
JLOC1	JLOC1_25014.1	1545	8e-25	1393 - 1452	100	60 / 60	plus
Harvest21	ABC24559	611	3e-25	539 - 598	100	60 / 60	plus
Harvest35	U35_8239	611	3e-25	539 - 598	100	60 / 60	plus

Contig Sequence (611 bp)

>U35_8239 611 Hv_44K_v2
ATGCTCAATTGGGGAAGAAACGCTGTGCTCAATTCTAGGGTTCCTGTGGGGAAGCTGCTG
GATCGGAGCGCTGGCTTCTCGTCAGGCTCCAAGCTGTTCGTCGGAGGTCTGTCCTATGAC
ACCAATGAAGTCGCTCTCAAAGACGCGTTCTCTCAGCACGGCAATGTCATCCAAGTGAAA
GTGATATGCCATCCTGTGACCGGGAGATCCAAAGGGTACGGCTTCGTCAAGTTCTCTTCA
GAAAGTGAAGCAGACACGGCATTGGAGAAGATGAACGATGAGGTGCTTGATGGAAAGACC
ATACGGGTGGATTATGCAAACGTCGGACGATCTGCTGCTGTTTCTGCTGCTGGTACTGCA
GATGAGTAATTTGGTTATCCTGAATCTGTGATGTTAGATGGAGCCCTGGACATGTACTCT
GTATATCAGAGCGATCACCAGTATATATTTTAAGTTCAGTCTTATGACCAGCTTTAAATA
AACCGGCCTTCAGATTTGTTTAGCTTGACATTGCCTGTAGCATTCCTGATCAAGTGATCA
GTCAGCTAATTCTCTTATACTAACACACGGAATTCATTCATCGACTTTATTTTTTCCGTG
TCAATCTTGCG

Homology of Contig U35_8239 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g62460.1	110	8e-52
Arabidopsis v10	None