barSeed - Barley Seed Development Database

Probe CUST_23105_PI390587928

Source Contig U35_3919

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23105_PI390587928	Hv_44K_v2	ATCAGCAAGATGGACAGGACGTCGATCCTGGGGGACACCATCGACTACATGAAGGAGCTG	623	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252912.1	2576	2e-24	389 - 448	100	60 / 60	plus	ABC01965 ABC01966 ABC01968 ABC01971 ABC01977 ABC02389 ABC09455 ABC11496 ABC12720 ABC24152 ABC32938 ABC38666 ABC41020 ABC43517 ABC49701
MLOC	AK356349	1361	2e-24	649 - 708	100	60 / 60	plus	ABC09455
MLOC	MLOC_26878.1	533	2e-24	86 - 145	100	60 / 60	plus	ABC09455
JLOC1	JLOC1_18211.1	531	8e-25	87 - 146	100	60 / 60	plus
Harvest21	ABC42244	438	3e-25	349 - 408	100	60 / 60	plus
Harvest21	ABC09456	983	3e-25	624 - 683	100	60 / 60	plus
Harvest35	U35_3919	1202	3e-25	624 - 683	100	60 / 60	plus

Contig Sequence (1202 bp)

>U35_3919 1202 Hv_44K_v2
CAACCCCCTCTCTCCATCTCCATCACTGTCAAGCAAGGGGAGCACCAAGAAAGAGGAGAG
GAGAGGGGAGGAGGATGGAGCTGGATGAGCAGGCCTTCTTGGAGGAGCTCTTCTCGCTGA
GGAGGGACGCCACGGCGTGGGAGTGCAATGCCATGGGGGACTTCTTCTCCCCGGCATGCG
GGGCCGCCGCCATGGGTGACTGCTTCCAGGACCGCCACCAGCCCACCGTCAGCGTCCTGC
CCACCTTCACCGCCTCCTACGACCCGCAGCATCAACAGCACCAGCAGGCGGGTGTGGGGT
TCGACTGCCTCAGCGAGGTCTACGGCGGAGCCACGCCCTTCGCCAATGCCGTCGCCGGCG
GGTACGGCGAGATGGGGTTCCTCGGCGCGATGGACCCCAAGGCGGCGGCGGAGGGGACGG
CCGGCCTCGGCGCCTGCAAGGTGGAGCCCGGGCTGGCGGCGGGGGCGGACGGCGGCCCGT
TCGGCCAGGGCCAGATGTCGGCGGCGCCGGCGTCGAGGAAGAAGCGGGTGGAGGGCATGC
CGTCCAAGAACCTGATGGCCGAGCGCCGCCGCCGGAAGCGCCTCAACGACCGCCTCTCCA
TGCTCCGGTCCGTCGTTCCCAAGATCAGCAAGATGGACAGGACGTCGATCCTGGGGGACA
CCATCGACTACATGAAGGAGCTGCTGGAGAGGATCCGGCGGCTGCAGGAGGAGATGGACG
GACCGGAGGCGGCGGCGGCGGCGGCGCCGCTGCTGAGCGTGTTCCGGGAGCTCAACCCCA
ACGAGATGCTCGCCAGGAACACCCCCAAGTTCGAGGTGGAGCGCAAGGAGGGGGAGGAGG
GCGACACCCGGGTGGAGATCTACTGCGCGGCCAAGCCGGGGCTGCTGCTGTCGACGGTGA
GCACCCTGGACACGCTCGGCCTCGACATCCAGCAGTGCGTCGTCAGCTGCTTCAACGACT
TCGCCATGCACGCATCCTGCTCCGAGATGCAGAGGGAGATGATGAGCGCGGACGCCATCA
AGCAGGAGCTGTTCAAGAACGCCGGCTACGGAGGCGGCTGCTTGTAGAGAGACGAGCAAG
AAGCAGCAGCAGCACCATGACCACCATGACCAGCAGCAGGAGAAGCAGGAAGGATAATAA
AGTAGAAGTAGCTGTAGCTGTAGCAGTAGCAGTGAGTAGAATTAGCACTTATCAGCTGGT
AG

Homology of Contig U35_3919 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g50900.1	214	4e-61	protein\|expressed protein
Brachypodium v1_2	Bradi1g30000.1	331	4e-136
Arabidopsis v10	None