- Probe CUST_21677_PI390587928
- Source Contig U35_16597
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21677_PI390587928 | Hv_44K_v2 | AGTTGACTTCCACAGAAGCTGTACTAAATGTTCCTATGATCTCTGCCTCATTTGCTGCCG | 71 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251482.1 | 1651 | 2e-24 | 945 - 1004 | 100 | 60 / 60 | plus | ABC01965 ABC01966 ABC01968 ABC01972 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701 |
| MLOC | MLOC_72381.1 | 159 | 3e-21 | 37 - 96 | 97 | 58 / 60 | plus | ABC01966 ABC01968 |
| MLOC | MLOC_26230.1 | 220 | 3e-21 | 117 - 176 | 97 | 58 / 60 | minus | ABC01966 ABC01968 |
| JLOC1 | JLOC1_48134.1 | 147 | 2e-21 | 25 - 84 | 97 | 58 / 60 | plus | |
| JLOC1 | JLOC1_18847.1 | 421 | 2e-21 | 338 - 397 | 97 | 58 / 60 | minus | |
| JLOC1 | JLOC1_17825.1 | 429 | 2e-21 | 23 - 82 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC01968 | 644 | 3e-25 | 18 - 77 | 100 | 60 / 60 | plus | ABC01968 |
| Harvest21 | ABC01966 | 1848 | 3e-25 | 1155 - 1214 | 100 | 60 / 60 | plus | ABC01966 |
| Harvest35 | U35_16597 | 195 | 3e-25 | 72 - 131 | 100 | 60 / 60 | plus |
Contig Sequence (195 bp)
>U35_16597 195 Hv_44K_v2 GAAGTGAAGGTTCCACAAGCTAATTGTGCAAAAAATGAAAGGATATTCTGTAACAACTGC AGAACATCTATAGTTGACTTCCACAGAAGCTGTACTAAATGTTCCTATGATCTCTGCCTC ATTTGCTGCCGGGAGCTTCGTCTTGGGCGCTGTCCTGGTGGTGGTGCTGCAAGTAACATG GTCCTTACACAACCC
Homology of Contig U35_16597 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |