barSeed - Barley Seed Development Database

Probe CUST_13352_PI390587928

Source Contig U35_395

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13352_PI390587928	Hv_44K_v2	GTTGTGTTGTCCAAGTTGTAATACCATGATGTAAATTAGAGGATTCGATTGTCTGAAGAA	922	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250272.1	1007	2e-24	908 - 967	100	60 / 60	plus	ABC00006 ABC00194 ABC00418 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC32758 ABC48253 ABC53013
Harvest21	ABC00936	964	3e-25	885 - 944	100	60 / 60	plus
Harvest21	ABC01012	700	5e-23	7 - 65	98	59 / 60	minus	ABC01012
Harvest35	U35_395	1020	3e-25	923 - 982	100	60 / 60	plus
Harvest35	U35_521	700	5e-23	636 - 694	98	59 / 60	plus

Contig Sequence (1020 bp)

>U35_395 1020 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGATCTCCACACTCATTCCTAATTCTTGGAGCACACAGACA
GGACCTCCATCGATCAGAATGGCCTCAACCACCATGTCGCTCTCTTCCCAAGCCTTTGCC
GGCAAGGCAGTGAAGAACTTGCCATCATCGTCTGTTTTTGGTGAGGCTCGCGTCACCATG
CGCAAAACGGCGGCAAAGGCCAAGCAGGTTGCCTCCGGCAGCCCGTGGTACGGCTCTGAC
CGTGTGCTCTACCTCGGCCCGCTTTCTGGTGAGCCCCCGAGCTACCTGACCGGTGAGTTC
CCTGGCGACTACGGTTGGGACACTGCTGGGTTGTCTGCTGACCCCGAGACCTTCGCCAAG
AACCGCGAGCTGGAGGTGATCCACTGCCGTTGGGCCATGCTTGGAGCGCTCGGCTGCGTC
TTCCCCGAGTTGCTGGCCCGAAACGGCGTGAAGTTCGGTGAGGCTGTTTGGTTCAAGGCC
GGATCCCAGATCTTCAGCGAGGGCGGCCTGGACTACCTTGGCAACCCAAGCCTTGTGCAT
GCGCAGAGTATCCTTGCCATCTGGGCGTGTCAGGTCGTGCTCATGGGCGCCGTCGAGGGT
TACCGCATTGCCGGTGGACCACTCGGTGAGATCGTCGACCCACTCTACCCAGGCGGTAGC
TTTGACCCGCTCGGCCTTGCCGACGACCCTGAGGCATTCGCCGAGCTCAAGGTTAAGGAG
GTCAAGAACGGCCGCCTCGCCATGTTCTCCATGTTTGGTTTCTTTGTGCAAGCCATCGTC
ACCGGCAAGGGTCCACTCGAGAACCTCGCTGACCATCTCGCCGACCCCGTCAACAACAAT
GCATGGGCATTCGCCACCAACTTCGTTCCCGGCAAGTAAGGTGTGTATGTGTGTGTGCAC
GGCGCTTGCGGTGAAGTGTGGCGTTGTGTTGTCCAAGTTGTAATACCATGATGTAAATTA
GAGGATTCGATTGTCTGAAGAAAAAAAATTGAGGATTCTGTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_395 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52240.1	266	1e-176	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi1g12130.1	267	0.0
Arabidopsis v10	AT2G34420.1	265	1e-167	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light harvesting complex gene B1B2 \| chr2:14522716-14523513 REVERSE LENGTH=265