barSeed - Barley Seed Development Database

Probe ABC01488

Source Contig ABC01488

barSeed

Links

Affymetrix Source Sequence (1633 bp)

>ABC01488 1633
GCACAACGAACCTTCCCCCGTTCCCCTCGTCCTTCCAGATCCGATCGAAGCCTCCCCCCA
TTCCCCTCGTCCCCTCGGTCGCCGGCCGACCGCAACCCGGATCGCCGCGCCGACGGGTTT
TGCCTCCCTCCGGTCCGAAACTCCGGTCGCGGCAACGACACGCGTTCGTCCGAGGCATCT
GCTTCAGCGACTCTCCGGCACACGGAGACTGCCACACTTGGAGGGCGCGGCGGACACGCG
CATCGGGGGGTGGATGCACAAGGGGATCAGCGGCGGCCAGCGTCGGCGGGTCAGTATCTG
CATGGAGATCCTCACCCGACCGGCGCTGCTGTTCCTGGACGAGCCCACCAGCGGCCACCC
GCCGCCGCCGCCGCAGCAGCAGCCGCCTGCCTCGAGCCGCCGTTGCCATGGGGATTACCC
TCTCTCTCTCGCCCTTGCGTATGTTGACCTGGTTTAGCATTCGTCTGGTCGTAGCTATGG
TTCGTGCAATCATTTGAATCGGCGCTGTTGCGTGTGAATCCCTCCTCGTCGGCCTCCTTC
CGCCCCGAACCTTAAATCCCACGACCAGCCTCCCTCCCACCCAAACCCGCCATTCTCCTC
CGTGCATCGCCTCGCCTCCTCCGCGCTTCATCCATGGCAGCGAGGCATCGGGTCTCTGCC
GTGATCTTCGACCTCGATGGCACCCTCCTGGACACATGTATGCGGAATCGCTTGCTCTCA
CGCTCGCGCCGCCGTCCCGTTCCGTTCGATGCTCCGCCTAGTTCAGTCGATGTATACAAT
GCTCGAGTAGCTACACAAATACAATGATTTGTCTTTTCTGTTCGTGACGGGGTGCTTGGT
CATCTCCTCCAAGCCTACGTCCTGCATTCGAAATTCAGGATTTGTTGTGCAGAGGTGCTG
CCTTTCCAATAAATAAAGCAGAGTAAAAGTGCAATACGGAGTAGCTTAAAAAAGTTCGAT
ATGTATAGTTTGTAAAGTGTGGCGTGTCTTGGTGCAGAGAGGGAAAAAGGGACGTCCTGA
AAGAGTTCTTGGAGACCTACGGGAAGGTCCCAGATGCGGCCAAGGAGGAGAAGCGATTGG
GGCAGATGCACAGGGAGTCCACGACCGGGATCAACGCAGATTACGGGTTGCCGATCACTG
TCGAGGAATATTCAGAGGCAATATACCCGTTGTATATCAAAAGAACTGAAAGACTGCTTT
CTGGTGGTTCTTGGTGGTGATCAGGTCCCTCATGGAAAACCTTGCCCTGACATTTGTAAG
CAGCCAAAATGGTGAAGGTCTGCTGCATCGGAGCTGGCTACGTCGGCGGCCCAACAATGG
CTGTTATTGCCATCAAATGCCCGACAATTGAGGTGATGTGCGAATCCAAGTACGAAGCTG
TGAAGCATATCAGCAAAGAGTAGCATATTATGTGTTGTAATTGTAGGCAGTAGTAGGCTT
ATTTGGGCTGTAGTATAATGTAATGATTGTAATAGACTAATGTAGTGTTGTTTTGGATGA
ATTCCGTTTGCTCTTTGGATTGTTCAAAATAATAATTGTGTATGTGATTTGAATACCCCA
GAAATGGTAACTTGGAAAAGGGGTTCAAGTTATAATGGTTGTTTGACATATTTTGTAAAA
AAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK372088	2400	0.0	20 - 1202	99	1181 / 1183	CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC45008
MLOC_45216.2	1017	0.0	1 - 1017	99	1016 / 1017	CUST_34613_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
AK371426	1694	7e-137	20 - 287	99	267 / 268	CUST_40490_PI390587928 CUST_34613_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.6	1349	0.0	1 - 347	99	346 / 347	CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.9	1333	2e-167	1 - 337	99	332 / 337	CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.12	1931	0.0	1334 - 1931	100	598 / 598	CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC23356 ABC45008
MLOC_45216.13	1425	0.0	828 - 1425	100	598 / 598	CUST_40490_PI390587928 CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC23356 ABC45008
MLOC_45216.3	1554	0.0	1 - 348	99	347 / 348	CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.4	1884	0.0	1 - 348	99	347 / 348	CUST_40490_PI390587928 CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.5	1219	0.0	1 - 419	99	418 / 419	CUST_34613_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.8	1963	4e-169	1 - 340	99	335 / 340	CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.1	1134	0.0	1 - 421	99	420 / 421	CUST_40490_PI390587928 CUST_34613_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.7	1966	2e-178	1 - 343	99	342 / 343	CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.11	853	8e-72	706 - 853	100	148 / 148	CUST_40490_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_23923.1	368	0.0	1 - 362	99	361 / 362	None	ABC01488
MLOC_45216.10	1847	5e-94	1359 - 1546	100	188 / 188	CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_21799.2	1426	3e-146	1 - 354	93	330 / 354	CUST_7614_PI390587928	ABC01488 ABC06549 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_21799.1	1275	3e-146	1 - 354	93	330 / 354	CUST_7614_PI390587928	ABC01488 ABC06549 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_72123.3	840	3e-116	586 - 840	96	246 / 255	CUST_39297_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_76145.3	1334	1e-115	1078 - 1334	96	248 / 258	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_76145.4	2702	1e-115	2446 - 2702	96	248 / 258	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_28721.2	1297	8e-112	1004 - 1271	94	253 / 269	None	ABC01488 ABC23356 ABC30053 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_51332.1	1660	4e-110	1355 - 1622	94	252 / 269	CUST_10281_PI390587928	ABC01488 ABC23356 ABC30053 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_76145.1	2025	1e-105	1787 - 2025	96	230 / 240	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_76145.5	1425	4e-105	1188 - 1425	96	229 / 239	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_28721.1	397	4e-105	145 - 397	94	238 / 253	None	ABC01488 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_72123.2	237	1e-104	4 - 237	96	225 / 234	None	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_76145.7	2115	8e-102	1884 - 2115	96	223 / 233	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_76145.8	2654	3e-101	2424 - 2654	96	222 / 232	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_72123.1	418	1e-100	192 - 418	96	218 / 227	None	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_79966.1	321	3e-91	98 - 316	95	207 / 219	None	ABC01488 ABC23356 ABC30053 ABC37639 ABC38653 ABC45008 ABC45560
MLOC_76145.2	1382	5e-84	1189 - 1382	96	186 / 194	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_63871.3	1298	1e-75	81 - 262	96	174 / 182	None	ABC01488 ABC19851
MLOC_63871.4	2109	1e-75	81 - 262	96	174 / 182	CUST_5132_PI390587928	ABC01488 ABC19851
MLOC_63871.5	1596	1e-75	81 - 262	96	174 / 182	CUST_5132_PI390587928	ABC01488 ABC19851
MLOC_63871.6	1555	1e-75	47 - 228	96	174 / 182	CUST_5132_PI390587928	ABC01488 ABC19851
MLOC_63871.7	2313	1e-75	45 - 226	96	174 / 182	CUST_19416_PI390587928 CUST_5132_PI390587928	ABC01488 ABC19851
MLOC_63871.1	1719	1e-75	136 - 317	96	174 / 182	CUST_19416_PI390587928 CUST_5132_PI390587928	ABC01488 ABC19851
MLOC_63871.2	1626	1e-75	136 - 317	96	174 / 182	CUST_19416_PI390587928 CUST_5132_PI390587928	ABC01488 ABC19851
AK353851	1731	8e-72	2 - 170	96	162 / 169	None	ABC01488 ABC19851
MLOC_67022.1	866	2e-72	643 - 848	91	187 / 206	CUST_27197_PI390587928 CUST_21973_PI390587928	ABC01488 ABC11000 ABC45008 ABC45560
MLOC_67022.3	1117	2e-72	861 - 1066	91	187 / 206	CUST_27197_PI390587928 CUST_21973_PI390587928	ABC01488 ABC11000 ABC45008 ABC45560
MLOC_67022.4	983	2e-72	727 - 932	91	187 / 206	CUST_27197_PI390587928 CUST_21973_PI390587928	ABC01488 ABC11000 ABC45008 ABC45560
MLOC_67022.5	1901	2e-72	1645 - 1850	91	187 / 206	CUST_27197_PI390587928 CUST_21973_PI390587928	ABC01488 ABC11000 ABC45008 ABC45560
MLOC_76145.6	2060	2e-62	1915 - 2060	97	141 / 146	None	ABC01488 ABC04556 ABC05320 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_54243.7	747	1e-59	210 - 347	97	134 / 138	None	ABC01488
MLOC_54243.3	1716	1e-59	1397 - 1534	97	134 / 138	CUST_32010_PI390587928	ABC01488
MLOC_54243.5	1663	1e-59	1296 - 1433	97	134 / 138	CUST_32010_PI390587928	ABC01488
MLOC_54243.2	2496	1e-59	1586 - 1723	97	134 / 138	CUST_32010_PI390587928	ABC01488
MLOC_54243.1	1955	1e-59	1586 - 1723	97	134 / 138	CUST_32010_PI390587928	ABC01488
MLOC_54243.6	2383	1e-59	1296 - 1433	97	134 / 138	CUST_32010_PI390587928	ABC01488
MLOC_22501.1	237	8e-57	96 - 237	95	135 / 142	None	ABC01488 ABC23356 ABC30053 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_67022.2	1814	4e-55	1649 - 1814	90	150 / 166	CUST_27197_PI390587928 CUST_21973_PI390587928	ABC01488 ABC11000 ABC45008 ABC45560
MLOC_44866.1	330	7e-53	196 - 330	95	128 / 135	None	ABC01488 ABC23356 ABC30053 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_23001.1	297	8e-52	1 - 127	96	122 / 127	None	ABC01488 ABC23356 ABC30053 ABC37639 ABC38653 ABC45008 ABC45560 ABC47039