- Probe CUST_19416_PI390587928
- Source Contig U35_24697
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19416_PI390587928 | Hv_44K_v2 | CACATCAGACGATACATTGTAATATTTTATTTATCATTGTGTGTGCCTTGTCACGGTGAT | 690 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.299 | 2.065 | 1.189 | 0.660 | 0.137 | 0.156 |
| Raw | 197.315 | 279.746 | 138.702 | 127.169 | 8.688 | 11.316 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_63871.8 | 855 | 2e-24 | 726 - 785 | 100 | 60 / 60 | plus | ABC19851 |
| MLOC | MLOC_63871.7 | 2313 | 2e-24 | 2194 - 2253 | 100 | 60 / 60 | plus | ABC01488 ABC19851 |
| MLOC | MLOC_63871.1 | 1719 | 2e-24 | 1601 - 1660 | 100 | 60 / 60 | plus | ABC01488 ABC19851 |
| MLOC | MLOC_63871.2 | 1626 | 2e-24 | 1508 - 1567 | 100 | 60 / 60 | plus | ABC01488 ABC19851 |
| JLOC1 | JLOC1_41880.11 | 972 | 8e-25 | 778 - 837 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41880.10 | 1466 | 8e-25 | 1272 - 1331 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41880.9 | 1667 | 8e-25 | 1473 - 1532 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41880.8 | 1760 | 8e-25 | 1566 - 1625 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41880.7 | 1584 | 8e-25 | 1390 - 1449 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41880.6 | 2081 | 8e-25 | 1887 - 1946 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41880.5 | 1926 | 8e-25 | 1732 - 1791 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41880.4 | 1963 | 8e-25 | 1769 - 1828 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41880.3 | 1850 | 8e-25 | 1656 - 1715 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41880.2 | 1578 | 8e-25 | 1384 - 1443 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41880.1 | 1705 | 8e-25 | 1511 - 1570 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC19851 | 772 | 3e-25 | 23 - 82 | 100 | 60 / 60 | minus | ABC19851 |
| Harvest35 | U35_24697 | 772 | 3e-25 | 691 - 750 | 100 | 60 / 60 | plus |
Contig Sequence (772 bp)
>U35_24697 772 Hv_44K_v2 CCCCCCATTTGAAGACCGCATTCAAGGTGCTTTGTCCATGGAACCATTACTCTCAAATGC TCAGATAGGTGATGCGGTTCTAAACAATACTCATACAATTAGAGCAGGTGAGTATACCTA CGATTCTATTCCTGATCAAATATCAGGAATTTTCTTTGGTTGGGCCAAGTCTGAAACTTA TGGAGTCTTTAAAGCGGTGGTCAGCATTGGGTGGGACCTTTCACCGGGAAAATTCGAAAG AGTGATGCACATATGTTTTCTTGATTCTCACTACAAGACCAAAACGGAGGATCGCTTGGA GCTTCTATTAATTGGTTACATCCGGAAGCTCCAAAGCTTGGAAAATATATCTCAAGCAAT GAGCATAACTGACGAAGACCAGGCCATTGCAAGAGATGCACTAGACCTCCCAGCTTTCTC TGAATATGCAAAGGCAAGGCGTGCATTGGACATCCCAGCCTCATCTGAATATGCAGAGCC ACGAAACGGCCTTCTTCTTGCTTGATGCCTGATGTGTCACTATGAGTTATCTGATATTAT TGACAGGATTGCGGGTAGCACTTATTGTCCTTAAAGACATGTAGGGATTGCTGGGAGAGT TGTAAGAGCTGCCGGGAACGAAGCTTGCTTAGCATTCAAGAACGTGGAATCTCTCGATAT TGTCAGTTTCTTGGTATCTTTTGACAAACTCACATCAGACGATACATTGTAATATTTTAT TTATCATTGTGTGTGCCTTGTCACGGTGATAAAATGTATACAGAGTACAGAC
Homology of Contig U35_24697 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi2g50350.2 | 344 | 4e-84 | |
| Arabidopsis v10 | None |