barSeed - Barley Seed Development Database

Probe ABC11000

Source Contig ABC11000

barSeed

Links

Affymetrix Source Sequence (974 bp)

>ABC11000 974
CCCTCGACCCGCAACCCAAACCCTAACCCTCCCGTCGGACCCCTGTCCCCTCTCCCCAAT
TGGACCGTTGCCGCCGCCGCCGCCCACCTACGGCGGCCAATCCCGCCTCCTTGCCTTCAT
CGACGACCACCCGCTCCCACCGCCCGCGGCTATACCGTCCTGTCGACCACCGGTGGCCTG
CTCGCCGGTGAGTACGTGCAGCGATCTCAAGAGAAGCGTGCTCGCAAGGGGAGGGGGAGG
TGCCGGATCTCGCGGGACAAGTGCGTCAACAACGTGTGAATCCTCAGATGGATATGCAGG
CTATGGATCGATGCCACCATATTGGGAACATTTTGTTACAACTAGAATTGTCATGCTTAG
GATTTCCCTTGCTGATTGGGAACATTTTGTGAAACTTATGTTATTCATGTAGCTTTTGCA
GTGGAAGGGCAAGTGAAAGAGAAGACTCGTTGGTGCCAACTGCTGAAAGACCTCAGTGAG
AAATTTAAGGCGTTGAAGATAGAGCACCAGATGTTACTGAAAGAATCAGTGGACTACAAA
AAGTGTTTGTAAGATGTTACATAGAGGTACTTGACGCGAGTCCCTCCAGGGCGCGAGAGG
GTCGCTCGTGGGCGTGCCGTGCCGCAGGGCTTGGACGGGAGGGCGTCCTTGGTAGCTATG
GCAATCGCCGGAACAAGACCCACACGTTGTGCATCCGCTACGGCCGCCGCAGCTTCCACA
TGCATAAGAGCACCTGCTCCTTGTGTGGCTACCCCACCGCCCGCATCTGCAAGTGTGAAG
TGCGAATCTAAGTCCGAAGCTCTGAAGCATATCAGCGAAGAGTAGCATATTATATGTTGT
AATTGTAGGCAGTAGTAGGCTTTTCTGGGTTGTAGTATATTGTAACGATTGTAATATACT
AATGTAGTCTTGTTTTGGATGAATTTCATTTGCTTTCCTGGAATTGTTTGAAATAAATGA
TTGTGTTTGTGATT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_67022.3	1117	0.0	87 - 1057	99	969 / 974	CUST_27197_PI390587928 CUST_21973_PI390587928	ABC01488 ABC11000 ABC45008 ABC45560
MLOC_67022.5	1901	3e-144	87 - 364	100	278 / 278	CUST_27197_PI390587928 CUST_21973_PI390587928	ABC01488 ABC11000 ABC45008 ABC45560
MLOC_67022.2	1814	3e-144	89 - 366	100	278 / 278	CUST_27197_PI390587928 CUST_21973_PI390587928	ABC01488 ABC11000 ABC45008 ABC45560
MLOC_67022.4	983	3e-144	87 - 364	100	278 / 278	CUST_27197_PI390587928 CUST_21973_PI390587928	ABC01488 ABC11000 ABC45008 ABC45560
MLOC_67022.1	866	1e-93	94 - 280	100	187 / 187	CUST_27197_PI390587928 CUST_21973_PI390587928	ABC01488 ABC11000 ABC45008 ABC45560
MLOC_45216.3	1554	2e-61	53 - 249	89	177 / 200	CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.4	1884	2e-61	53 - 249	89	177 / 200	CUST_40490_PI390587928 CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.9	1333	2e-61	38 - 234	89	177 / 200	CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.10	1847	2e-61	38 - 234	89	177 / 200	CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.5	1219	2e-61	52 - 248	89	177 / 200	CUST_34613_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.11	853	2e-61	37 - 233	89	177 / 200	CUST_40490_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.6	1349	2e-61	52 - 248	89	177 / 200	CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.8	1963	2e-61	41 - 237	89	177 / 200	CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.1	1134	2e-61	54 - 250	89	177 / 200	CUST_40490_PI390587928 CUST_34613_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.7	1966	2e-61	48 - 244	89	177 / 200	CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.2	1017	2e-61	54 - 250	89	177 / 200	CUST_34613_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_21799.2	1426	2e-61	59 - 255	89	177 / 200	CUST_7614_PI390587928	ABC01488 ABC06549 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_21799.1	1275	2e-61	59 - 255	89	177 / 200	CUST_7614_PI390587928	ABC01488 ABC06549 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
AK371426	1694	8e-60	1431 - 1627	88	176 / 200	CUST_40490_PI390587928 CUST_34613_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_72123.1	418	3e-59	190 - 390	87	179 / 205	None	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_17022.1	2457	3e-59	2010 - 2155	95	139 / 146	CUST_1804_PI390587928 CUST_4475_PI390587928 CUST_12903_PI390587928	ABC04102 ABC11000
MLOC_17022.2	2334	3e-59	1908 - 2053	95	139 / 146	CUST_1804_PI390587928 CUST_4475_PI390587928 CUST_12903_PI390587928	ABC04102 ABC11000
MLOC_17022.3	2260	3e-59	1779 - 1924	95	139 / 146	CUST_4475_PI390587928 CUST_12903_PI390587928	ABC04102 ABC11000
MLOC_72123.3	840	1e-58	581 - 784	87	181 / 208	CUST_39297_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_76145.7	2115	4e-58	1887 - 2083	88	175 / 200	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_76145.8	2654	4e-58	2426 - 2622	88	175 / 200	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_76145.1	2025	4e-58	1790 - 1986	88	175 / 200	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_76145.5	1425	4e-58	1190 - 1386	88	175 / 200	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_76145.3	1334	4e-58	1081 - 1277	88	175 / 200	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_76145.4	2702	4e-58	2449 - 2645	88	175 / 200	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_72123.2	237	4e-58	7 - 203	88	175 / 200	None	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_76145.2	1382	5e-57	1192 - 1380	88	169 / 192	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039