barSeed - Barley Seed Development Database

Probe ABC45560

Source Contig ABC45560

barSeed

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Affymetrix Source Sequence (685 bp)

>ABC45560 685
CTGTTTTGTTTGTTAAACATAAACACCTCCTTCAATGTTCACTGTTGAGAATGGTGGTAG
CTTAAAACTGTCAGAAATCTTTGATGTCTAGGAGGAATTCTGCTTGCCAGATGAGATTTG
AGCACAATGCTCCTTAACCCGAATGGTGGTAGCTTAACAATGAACTTGATTGAATTTACC
CTGTACATTCAGACTGTAGAGGAGCAGCAGCAGCATTTGTTTCTGCAGAATTTTTTCAAC
TACAGTTCTGTTGTATGATTGTGTTGTTGTTTGAGAACATTTTAGTCGCTTCATAAACAC
ATACTGATTAATGTTAGTCATACTATTTATGTACATTTCATTTCCTGTCAATTATTGCAT
CTAAGTTATTGGATCACTCATTGACCACTGTTTCTTATTCTTATATGTTTATTCTTATTT
TTTGCACAGGTGAAGTGCGAATCCAAGTCTGAAGCTGTGAAGCATATCAGAAAAGACTAG
CATATTATGTGTTGTAATTGTAGGCAGTAGTAGGCTTATTTGGGCTGTAGTATAATGTAA
CGATTGTAATAGACTAATGTAGTGTTGTTTTGGACGAATTCTGTTTGCTCTTTGGATTGT
TCAAAATAATGATTGTGTATGTGATTTGAATACCCCAGAAATGGTAACTTGGAAAAGGGG
TTCAAGTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_72123.3	840	0.0	159 - 827	99	668 / 669	CUST_39297_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_76145.6	2060	4e-171	1696 - 2060	96	353 / 366	None	ABC01488 ABC04556 ABC05320 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_28721.2	1297	3e-147	828 - 1245	90	376 / 418	None	ABC01488 ABC23356 ABC30053 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_72123.2	237	2e-119	5 - 237	100	233 / 233	None	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_72123.1	418	9e-118	182 - 418	99	235 / 237	None	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_51332.1	1660	9e-113	1319 - 1596	93	260 / 279	CUST_10281_PI390587928	ABC01488 ABC23356 ABC30053 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_79966.1	321	4e-111	60 - 316	95	244 / 257	None	ABC01488 ABC23356 ABC30053 ABC37639 ABC38653 ABC45008 ABC45560
MLOC_45216.3	1554	4e-111	10 - 251	97	234 / 242	CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.4	1884	4e-111	10 - 251	97	234 / 242	CUST_40490_PI390587928 CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.5	1219	4e-111	9 - 250	97	234 / 242	CUST_34613_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.6	1349	4e-111	9 - 250	97	234 / 242	CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.1	1134	4e-111	11 - 252	97	234 / 242	CUST_40490_PI390587928 CUST_34613_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.7	1966	4e-111	5 - 246	97	234 / 242	CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.2	1017	4e-111	11 - 252	97	234 / 242	CUST_34613_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_76145.3	1334	1e-110	1079 - 1319	97	234 / 242	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_76145.4	2702	1e-110	2447 - 2687	97	234 / 242	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.8	1963	1e-110	1 - 241	97	233 / 241	CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
AK371426	1694	2e-109	1429 - 1670	96	233 / 242	CUST_40490_PI390587928 CUST_34613_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_76145.5	1425	2e-109	1187 - 1425	97	232 / 240	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_76145.1	2025	7e-109	1788 - 2025	97	231 / 239	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.9	1333	7e-109	1 - 238	97	230 / 238	CUST_34613_PI390587928 CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.10	1847	9e-108	1 - 236	97	228 / 236	CUST_3645_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_76145.8	2654	3e-107	2420 - 2654	97	228 / 236	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_45216.11	853	3e-107	1 - 235	97	227 / 235	CUST_40490_PI390587928	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_76145.7	2115	5e-105	1885 - 2115	97	224 / 232	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_44866.1	330	1e-100	18 - 330	89	278 / 313	None	ABC01488 ABC23356 ABC30053 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_28721.1	397	1e-100	141 - 384	94	229 / 244	None	ABC01488 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_21799.2	1426	4e-96	16 - 257	93	225 / 242	CUST_7614_PI390587928	ABC01488 ABC06549 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_21799.1	1275	4e-96	16 - 257	93	225 / 242	CUST_7614_PI390587928	ABC01488 ABC06549 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_23001.1	297	5e-95	1 - 297	89	264 / 297	None	ABC01488 ABC23356 ABC30053 ABC37639 ABC38653 ABC45008 ABC45560 ABC47039
MLOC_76145.2	1382	3e-87	1190 - 1382	97	187 / 193	None	ABC01488 ABC04556 ABC05320 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_9758.1	344	3e-82	1 - 274	88	241 / 274	None	ABC23356 ABC30053 ABC38653 ABC45560
MLOC_22501.1	237	7e-79	60 - 237	97	172 / 178	None	ABC01488 ABC23356 ABC30053 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_67022.1	866	1e-71	636 - 848	90	192 / 214	CUST_27197_PI390587928 CUST_21973_PI390587928	ABC01488 ABC11000 ABC45008 ABC45560
MLOC_67022.3	1117	1e-71	854 - 1066	90	192 / 214	CUST_27197_PI390587928 CUST_21973_PI390587928	ABC01488 ABC11000 ABC45008 ABC45560
MLOC_67022.4	983	1e-71	720 - 932	90	192 / 214	CUST_27197_PI390587928 CUST_21973_PI390587928	ABC01488 ABC11000 ABC45008 ABC45560
MLOC_67022.5	1901	1e-71	1638 - 1850	90	192 / 214	CUST_27197_PI390587928 CUST_21973_PI390587928	ABC01488 ABC11000 ABC45008 ABC45560
MLOC_51260.2	422	2e-69	1 - 177	94	166 / 177	None	ABC45560
MLOC_24810.1	680	2e-55	563 - 680	100	118 / 118	None	ABC45560
MLOC_67022.2	1814	1e-52	1642 - 1814	89	154 / 174	CUST_27197_PI390587928 CUST_21973_PI390587928	ABC01488 ABC11000 ABC45008 ABC45560