barSeed - Barley Seed Development Database

Probe ABC30053

Source Contig ABC30053

barSeed

Links

Affymetrix Source Sequence (510 bp)

>ABC30053 510
GTCGGCTGCTTTACTTAAAGTGATGATAATTTTTCTATGTTCAGTTCTGCTGCATGATTA
AGGCCGTGCGCACTACTAGCATTTAATTGTCTGCCTTTTAGATGTAACATTGCAATTCAG
ATAATAAGTGATGTACAGTTCTGTACTGTTATGTGTCTTTGGCATTTTCTTAGAACATTT
TTGTAGCTTCAACTATGAACATTTCTATCACATACCGTATCTTTAAATTTGAATCTTGAT
TGCTTCTGTTTACTCCGAGTCTAAGATGTGTAGTAGTAGCATTTTTATTCTTATATGTTC
ATTCTTATTCATATATGTTCATTCTTATTTTTTGCACAGGTGAAATGCGAATCCAAGTCC
GAAGCTGCGAAGCATATCAGCAAAGAGTAGCATATTATGTATTGTAATTGTAGGCAATAG
TAGGCTTATTTGGGCTGTAGTACTGTAGTATAATGTAACGATTGTAATAGACTAATGTAT
NATTGTTTTGGACGAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_49319.1	279	4e-145	1 - 279	100	279 / 279	CUST_1552_PI390587928	ABC23356 ABC30053 ABC38653
MLOC_24944.1	519	2e-133	241 - 519	97	272 / 279	None	ABC30053
MLOC_28721.2	1297	1e-69	965 - 1154	91	181 / 198	None	ABC01488 ABC23356 ABC30053 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_79966.1	321	1e-64	58 - 246	90	177 / 197	None	ABC01488 ABC23356 ABC30053 ABC37639 ABC38653 ABC45008 ABC45560
MLOC_51332.1	1660	1e-64	1320 - 1505	90	176 / 195	CUST_10281_PI390587928	ABC01488 ABC23356 ABC30053 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_22501.1	237	1e-64	58 - 229	92	166 / 180	None	ABC01488 ABC23356 ABC30053 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_23001.1	297	1e-60	1 - 165	92	159 / 173	None	ABC01488 ABC23356 ABC30053 ABC37639 ABC38653 ABC45008 ABC45560 ABC47039
MLOC_44866.1	330	5e-59	157 - 327	91	162 / 179	None	ABC01488 ABC23356 ABC30053 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC_9758.1	344	1e-55	1 - 136	96	130 / 136	None	ABC23356 ABC30053 ABC38653 ABC45560