- Probe CUST_5132_PI390587928
- Source Contig U35_26431
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5132_PI390587928 | Hv_44K_v2 | TGTTACTCAATTGCTGATCTCATCCTCTATTCACTGCTAGACTTCCATCCTGAGCTGTGG | 644 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.295 | 1.284 | 1.264 | 0.791 | 0.339 | 0.302 |
| Raw | 26.503 | 42.247 | 35.525 | 37.031 | 3.069 | 2.656 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_63871.4 | 2109 | 2e-24 | 1217 - 1276 | 100 | 60 / 60 | plus | ABC01488 ABC19851 |
| MLOC | MLOC_63871.5 | 1596 | 2e-24 | 791 - 850 | 100 | 60 / 60 | plus | ABC01488 ABC19851 |
| MLOC | MLOC_63871.6 | 1555 | 2e-24 | 1015 - 1074 | 100 | 60 / 60 | plus | ABC01488 ABC19851 |
| MLOC | MLOC_63871.7 | 2313 | 2e-24 | 1439 - 1498 | 100 | 60 / 60 | plus | ABC01488 ABC19851 |
| MLOC | MLOC_63871.1 | 1719 | 2e-24 | 846 - 905 | 100 | 60 / 60 | plus | ABC01488 ABC19851 |
| MLOC | MLOC_63871.2 | 1626 | 2e-24 | 846 - 905 | 100 | 60 / 60 | plus | ABC01488 ABC19851 |
| JLOC1 | JLOC1_41880.9 | 1667 | 8e-25 | 811 - 870 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41880.8 | 1760 | 8e-25 | 811 - 870 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41880.5 | 1926 | 8e-25 | 755 - 814 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC22258 | 724 | 3e-25 | 645 - 704 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_26431 | 724 | 3e-25 | 645 - 704 | 100 | 60 / 60 | plus |
Contig Sequence (724 bp)
>U35_26431 724 Hv_44K_v2 CAGGAATTCGTTCGAGGCTCCGTGCCTCGCCTTTCCTCCTCTGCGCTTCATCCATGGCAG CGACGCATCGGGTCTCCGCCGTGATCTTCGACCTCGATGGCACCCTCCTGGACACAGAGA GGGCAACAAGGGACGTCCTGAAAGAGTTCTTGGGGACCTACGGGAAGGTCCCAGATGCGG CCAAGGAGGAGAAGCGATTGGGGCAGATGCACAGGGAGTCCACGACCGGGATCATCGCAG ATTACGGGTTGCCGTTCACCGTCGAGGAGTATTCAGAGGCAATATACCCGCTGTATATCA AAAGGTGGCAAAGGGCAAGCCCGCTTCCAGGGGTTAACAGGCTTCTCAAGCACCTCCACA AGAACGGAGTACCCCTGGCGCTCGCTTCAAATTCCATCAGGAGAAATATTGATCACAAAA TTTTGAAACTAGGAGAACTGAAAGACTGCTTTTCGGTGGTTCTTGGTGGTGATCAGGTCC CTCATGGAAAACCTTGCCCTGACATATTTCTAGAGGCCGCAAAGAGACTTGGTGTAAATC CGTCATCATGCTTGGTCATAGAAGATTCTCTTGTTGGAGTTCAGGCTGCCAAGGCTTCTG GGGCGAAGGTAGTTGCTGTTCCATCACTCCAAAGTCAAAGGCATTGTTACTCAATTGCTG ATCTCATCCTCTATTCACTGCTAGACTTCCATCCTGAGCTGTGGGGTCTCCCCCCATTTG AAGA
Homology of Contig U35_26431 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g55310.1 | 335 | 2e-121 | protein|haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed |
| Brachypodium v1_2 | Bradi2g50350.1 | 394 | 9e-129 | |
| Arabidopsis v10 | AT4G21470.1 | 379 | 7e-60 | | Symbols: ATFMN/FHY, FMN/FHY | riboflavin kinase/FMN hydrolase | chr4:11431284-11433197 FORWARD LENGTH=379 |