barSeed - Barley Seed Development Database

Probe ABC01237

Source Contig ABC01237

barSeed

Links

Affymetrix Source Sequence (1647 bp)

>ABC01237 1647
GCACCAAAGCCGCCCATCTCGTTCCGTTCCAGCTCAGGCGAGCCAGCGACCACCGGCCTC
CGGCGAGGGCAGCAGCGATGGAGGGCAAGGAGGAGGACGTGCGCCTCGGGGCGAACAAGT
ACTCGGAGCGGCAGCCCATCGGCACGGCGGCGCAGGGGTCCGAGGACAAGGACTACAAGG
AGCCCCCGCCGGCGCCGCTGTTCGAGCCCGGCGAGCTCAAGTCGTGGTCCTTCTACCGCG
CCGGCATCGCCGAGTTCATGGCCACCTTCCTCTTCCTCTACGTCACCATCCTCACCGTCA
TGGGCTACAGCGGCGCCGCCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGT
CCTTCGGCGGCATGATCTTCGCCCTCGTCTACTGCACCGCCGGCATCTCTGGCGGGCACA
TCAACCCGGCGGTGACCTTCGGGCTGTTCCTGGCGAGGAAGCTGTCGCTGACGAGGGCGG
TGTTCTACATCATCATGCAGTGCCTGGGCGCCATCTGCGGCGCCGGCGTGGTCAAGGGGT
TCCAGCAGGGCCTGTACATGGGCAACGGCGGCGGCGCCAACGTGGTGGCGTCCGGCTACA
CCAAGGGCTCCGGGCTCGGCGCCGAGATCATCGGCACCTTCGTCCTCGTCTACACCGTCT
TCTCCGCCACCGACGCCAAGAGGAACGCCAGGGACTCCCACGTTCCCATCCTCGCCCCGC
TGCCCATCGGGTTCGCCGTGTTCCTGGTCCACCTGGCCACCATCCCCATCACCGGCACCG
GCATCAACCCGGCGAGGAGCCTCGGCGCGGCCATCATCTACAACAGGGAGCACGCCTGGT
CAGACCACTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCGCTGGCCGCCATCTACC
ACCAGGTGGTCATCAGAGCGATCCCATTCAAGACCAAGTCCTAAGCTGCTGCTACAAAGA
AAGATGCCATCCCAACCCGAAGAGCAAACTGCGTGTTCTGAGTGAATTTCTTTCTGATGG
GGGCGGCCCTCTCTTCCCATCGTCCGTGTTACCGTGGAATTCCAATTTGTCTTCCAAGTT
TGATGTGCTACTCTTGCTCTTGCTCTGTATTCACCTGAACCCAGACAGAGGACTTGTATG
TAATCTCATCAGTGCTCAGTTGTTGTGTAGTACTGCTCGTTGTTGTGCAAATCCAGCAAA
GTTGTTCCAAGTAGTGCCCTCTTCAATTAGATTTCAGCCCCGGCTGCTATCTTGCTGCAG
TTCAGTACAACATGACAAGTTATCGCGCGGTAGAAAGAAACTCGAGGGAAACTGTTGGGT
CGTCCGAGCCGTTGCTCAGCCTCAGCTGCTGCGTGCTACGCGGTGCATGCGGCATATGCT
GCCTGTCAGGCTGTGGCTGAAGCTATGGCTTGGTCACAGGCTAGCTGGTGGTAGATGGGG
CAAAGGACAATGATGAGCGGAGCCACCAGCCGTTGGCAACTAGTANCGGCGTGGGGCGGG
GCGTGGCGTGGCTGCCACTCTGGTCTGGTCCTATTATGCATNTGGTCGTGCGCCCACTGC
GCGGCCGCCCTGTGTGTCAGGACCTAAAATGTTTATATTTTCGTACCAAAACAAGTTTGC
ATATCAACCCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_80094.1	1170	0.0	15 - 1170	100	1156 / 1156	CUST_36527_PI390587928 CUST_20150_PI390587928 CUST_30465_PI390587928	ABC01216 ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01230 ABC01235 ABC01237 ABC01242 ABC19393 ABC31055 ABC47730
MLOC_80094.2	1506	0.0	32 - 1136	99	1102 / 1105	CUST_36527_PI390587928 CUST_20150_PI390587928 CUST_30465_PI390587928	ABC01216 ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01230 ABC01235 ABC01237 ABC01242 ABC19393 ABC47730
MLOC_10855.1	1362	0.0	196 - 1052	88	758 / 862	None	ABC01230 ABC01237
AK251251.1	1261	0.0	68 - 938	85	742 / 872	CUST_34619_PI390587928	ABC01219 ABC01225 ABC01226 ABC01228 ABC01237 ABC01239 ABC01242 ABC19393 ABC49778
MLOC_10855.2	1103	0.0	162 - 793	88	560 / 637	None	ABC01230 ABC01237
AK368098	1476	1e-179	77 - 718	85	545 / 643	CUST_34672_PI390587928	ABC01219 ABC01226 ABC01228 ABC01237 ABC01242
AK353861	1168	4e-164	120 - 885	81	624 / 770	CUST_35384_PI390587928 CUST_34668_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01237 ABC01242
AK252600.1	1275	6e-163	130 - 908	81	631 / 782	CUST_13113_PI390587928 CUST_35384_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01237 ABC01240 ABC01242 ABC29328
MLOC_45747.1	1059	4e-159	1 - 608	84	511 / 610	None	ABC01219 ABC01226 ABC01228 ABC01237
AK250563.1	1289	6e-158	136 - 852	81	582 / 719	CUST_14520_PI390587928 CUST_14503_PI390587928 CUST_11708_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
MLOC_56278.1	1729	3e-156	804 - 1520	81	581 / 719	CUST_14520_PI390587928 CUST_211_PI415269222	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
MLOC_13871.2	1881	7e-147	352 - 922	83	477 / 573	CUST_35384_PI390587928 CUST_8517_PI390587928 CUST_34650_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242 ABC39024
MLOC_13871.1	1607	7e-147	352 - 922	83	477 / 573	CUST_35384_PI390587928 CUST_34650_PI390587928 CUST_8517_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242 ABC39024
MLOC_56278.2	2119	4e-144	804 - 1468	81	538 / 666	CUST_14520_PI390587928 CUST_211_PI415269222 CUST_11708_PI390587928 CUST_14503_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
MLOC_54419.3	1512	5e-139	278 - 1043	79	609 / 770	CUST_13113_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01237 ABC01240 ABC01242 ABC19393
MLOC_56278.4	884	3e-136	28 - 675	80	524 / 651	None	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
MLOC_18325.1	1446	2e-132	283 - 1009	79	575 / 730	CUST_18696_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01237 ABC01242
AK359099	1244	1e-125	132 - 865	78	576 / 738	CUST_14576_PI390587928 CUST_15816_PI390587928	ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01237 ABC01242 ABC19393
MLOC_552.2	1024	1e-125	123 - 856	78	576 / 738	CUST_15816_PI390587928	ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01237 ABC01242 ABC19393
MLOC_62649.1	1267	4e-120	342 - 907	81	458 / 567	CUST_35384_PI390587928 CUST_34645_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242 ABC32067
MLOC_75402.1	684	4e-105	19 - 400	85	324 / 382	None	ABC01216 ABC01219 ABC01225 ABC01226 ABC01228 ABC01237 ABC01239 ABC01242 ABC19393
MLOC_552.1	1349	1e-84	490 - 897	81	331 / 410	CUST_14576_PI390587928 CUST_15816_PI390587928	ABC01219 ABC01222 ABC01225 ABC01226 ABC01228 ABC01237 ABC01242 ABC19393
MLOC_54419.2	3119	5e-84	2193 - 2759	78	444 / 572	CUST_34615_PI390587928 CUST_13113_PI390587928 CUST_14519_PI390587928	ABC01216 ABC01222 ABC01223 ABC01237 ABC01240 ABC01242
MLOC_56278.3	1287	2e-63	318 - 519	89	179 / 202	CUST_11708_PI390587928 CUST_14503_PI390587928 CUST_14520_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
MLOC_14810.1	380	5e-54	1 - 203	86	175 / 203	None	ABC01219 ABC01226 ABC01237