barSeed - Barley Seed Development Database

Probe ABC19393

Source Contig ABC19393

barSeed

Links

Affymetrix Source Sequence (623 bp)

>ABC19393 623
GACGAGGCCCTCGGCGGCGGCGCAAACACGGTGGCCGACGGCGTCTCGGTCGGCGCGGGG
CTCGGGGCGGAGATCGCCGGCACGTTCGTGCTGGTGTACACCGTCCTCTCCGCCACCGAC
CCCAAGCGCACCGCGCGCGACTCCTTCATCCCCGTGCTGGTGCCGCTGCCCATCGGCTTC
GCCGTGTTCATCGTGCACCTGGCCACCATACCCATCACCGGCACCGGCATCAACCCGGCC
AGGAGCCTCGGCGCCGCCGTCATGTACAACCAGCACAAGGCATGGAAGGACCACTGGATA
TTCTGGGTGGGGCCGCTCCTCGGCGCGACGGTGGCTGCGTTGTACCACCGGTTCGTGCTG
CGCGGCGAGGCCGCCAAGGCGCTGGGCTCGTTCAGGAGCACCGGCGCCGCCACCGCGCGA
ACCTAAATCACATACACGTGTGATCGGTCGAAGCTCCTTGATGCATAGTATGCTGGCTCT
AATTTGGTTGGTTAACTGTTCTCGCGATGTATGTCCGGTGTAATTATTACAGTGTTTTTT
TTAAACTTACTGATTATTACAGTGTTTTTTTTTGGAACTTATAATTATCACAGTGTTGAA
CAGTGCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK359099	1244	0.0	515 - 1120	100	606 / 606	CUST_15816_PI390587928 CUST_14576_PI390587928	ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01237 ABC01242 ABC19393
MLOC_552.2	1024	0.0	506 - 1024	100	519 / 519	CUST_15816_PI390587928	ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01237 ABC01242 ABC19393
AK365197	696	0.0	263 - 627	100	365 / 365	CUST_15816_PI390587928 CUST_14576_PI390587928	ABC19393
MLOC_552.1	1349	8e-153	629 - 921	100	293 / 293	CUST_14576_PI390587928 CUST_15816_PI390587928	ABC01219 ABC01222 ABC01225 ABC01226 ABC01228 ABC01237 ABC01242 ABC19393
MLOC_72670.1	1269	1e-85	361 - 721	83	299 / 362	None	ABC01216 ABC01222 ABC01223 ABC19393
AK373720	1174	3e-82	549 - 909	82	297 / 362	None	ABC01216 ABC01222 ABC01223 ABC19393
MLOC_54419.3	1512	2e-79	229 - 617	81	315 / 391	CUST_13113_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01237 ABC01240 ABC01242 ABC19393
AK251251.1	1261	1e-71	622 - 907	84	240 / 286	CUST_34619_PI390587928	ABC01219 ABC01225 ABC01226 ABC01228 ABC01237 ABC01239 ABC01242 ABC19393 ABC49778
MLOC_75402.1	684	7e-64	33 - 369	80	270 / 338	None	ABC01216 ABC01219 ABC01225 ABC01226 ABC01228 ABC01237 ABC01239 ABC01242 ABC19393
MLOC_80094.1	1170	9e-58	579 - 920	79	269 / 342	CUST_30465_PI390587928 CUST_36527_PI390587928 CUST_20150_PI390587928	ABC01216 ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01230 ABC01235 ABC01237 ABC01242 ABC19393 ABC31055 ABC47730
MLOC_80094.2	1506	9e-58	231 - 572	79	269 / 342	CUST_36527_PI390587928 CUST_30465_PI390587928 CUST_20150_PI390587928	ABC01216 ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01230 ABC01235 ABC01237 ABC01242 ABC19393 ABC47730