barSeed - Barley Seed Development Database

Probe ABC01223

Source Contig ABC01223

barSeed

Links

Affymetrix Source Sequence (1125 bp)

>ABC01223 1125
GAGCTAAGCGCATTCGCATCTTGAGCGCACACACACCGACCCTAGCTTGCCGATCAGCCG
AGGATGGCCAAGGACATCGAGGCGGCGCCCCCAGGCGGCGAGTACGGGGCCAAGGACTAC
TCCGACCCGCCGCCGGCGCCGCTCTTCGACGCGGAGGAGCTGACCAAGTGGTCCCTGTAC
CGCGCGGTGATCGCCGAGTTCGTGGCCACGCTGCTCTTCCTCTACATCACCGTGGCCACC
GTCATTGGGTACAAGCACCAGGCGGACCCCGCCGGCCCCAATGCTGCCGACGCGGCGTGC
AGCGGCGTCGGCATCCTCGGCATCGCCTGGGCGTTCGGCGGCATGATCTTCGTCCTCGTC
TACTGCACCGCCGGTGTCTCGGGTGGCCACATCAACCCGGCGGTGACGTTCGGGCTGTTC
CTGGCGCGCAAGGTTTCGCTGGTGCGCGCGGTGCTCTACATCATCGCGCAGTGCCTGGGC
GCCATCTGTGGCGTGGGGCTCGTCAAGGGGTTCCAGAGCGCCTTCTACGTGCGCTACGGC
GGCGGCGCCAACGAGCTCAGCGCCGGCTACTCCAAGGGCACCGGGCTCGCCGCCGAGATC
ATCGGCACCTTCGTGCTCGTCTACACCGTCTTCTCCGCCACCGACCCCAAGCGCAGCGCC
CGTGACTCCCACGTCCCAGTGCTGGCTCCTTTGCCAATCGGCTTCGCGGTGTTCATGGTG
CACCTGGCCACTATCCCAATCACCGGCACCGGCATCAACCCGGCAAGGAGCTTCGGAGCT
GCCGTGATCTACAACAACGAGAAGGCCTGGGATGACCACTGGATCTTCTGGGTGGGGCCA
TTCATCGGAGCCGCCATTGCCGCCGCCTACCACCAGTACGTCCTGAGGGCGAGTGCCACC
AAGCTTGGCTCGTCTGCCTCCTTCGGTAGGAGCTAGATCGGTCCGCCGCCGTGTGGATGA
TCGGAGGCACTGAAAAAGAAATATATCAGTGTGATATGGCTCGGATCGTGTATTATGCAA
GCGTCTGTATTTTTCTAGATGCGTTTGGATGTCTTTAAAATTTCTCTAGAATTCTGTGAA
TTTGGATCGTTGAGGAATTTGGATGCCTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK353861	1168	0.0	10 - 1117	99	1107 / 1108	CUST_34668_PI390587928 CUST_35384_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01237 ABC01242
AK252600.1	1275	0.0	91 - 974	95	843 / 885	CUST_13113_PI390587928 CUST_35384_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01237 ABC01240 ABC01242 ABC29328
MLOC_13871.2	1881	0.0	323 - 1161	89	747 / 842	CUST_34650_PI390587928 CUST_35384_PI390587928 CUST_8517_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242 ABC39024
MLOC_13871.1	1607	0.0	323 - 1161	89	747 / 842	CUST_34650_PI390587928 CUST_35384_PI390587928 CUST_8517_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242 ABC39024
MLOC_54419.3	1512	0.0	251 - 1060	86	696 / 810	CUST_13113_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01237 ABC01240 ABC01242 ABC19393
MLOC_62649.1	1267	0.0	320 - 1109	85	675 / 794	CUST_34645_PI390587928 CUST_35384_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242 ABC32067
MLOC_8032.1	593	0.0	193 - 593	100	401 / 401	CUST_35384_PI390587928	ABC01222 ABC01223
MLOC_54419.2	3119	0.0	2193 - 2776	87	510 / 584	CUST_13113_PI390587928 CUST_34615_PI390587928 CUST_14519_PI390587928	ABC01216 ABC01222 ABC01223 ABC01237 ABC01240 ABC01242
MLOC_37440.1	897	8e-180	538 - 897	98	354 / 360	None	ABC01223
MLOC_18325.1	1446	1e-172	285 - 1045	81	634 / 781	CUST_18696_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01237 ABC01242
AK250563.1	1289	4e-168	129 - 895	81	646 / 798	CUST_11708_PI390587928 CUST_14520_PI390587928 CUST_14503_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
MLOC_56278.1	1729	2e-166	797 - 1563	81	645 / 798	CUST_14520_PI390587928 CUST_211_PI415269222	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
MLOC_80094.1	1170	6e-166	180 - 918	81	625 / 770	CUST_30465_PI390587928 CUST_36527_PI390587928 CUST_20150_PI390587928	ABC01216 ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01230 ABC01235 ABC01237 ABC01242 ABC19393 ABC31055 ABC47730
MLOC_80094.2	1506	6e-166	233 - 971	81	625 / 770	CUST_30465_PI390587928 CUST_36527_PI390587928 CUST_20150_PI390587928	ABC01216 ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01230 ABC01235 ABC01237 ABC01242 ABC19393 ABC47730
MLOC_56278.2	2119	3e-154	797 - 1469	82	569 / 698	CUST_11708_PI390587928 CUST_14520_PI390587928 CUST_211_PI415269222 CUST_14503_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
AK359099	1244	5e-147	133 - 891	79	621 / 783	CUST_14576_PI390587928 CUST_15816_PI390587928	ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01237 ABC01242 ABC19393
MLOC_552.2	1024	5e-147	124 - 882	79	621 / 783	CUST_15816_PI390587928	ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01237 ABC01242 ABC19393
MLOC_56278.4	884	1e-142	40 - 718	81	572 / 710	None	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
MLOC_23039.1	780	5e-127	1 - 286	95	273 / 286	CUST_35384_PI390587928	ABC01222 ABC01223
MLOC_72670.1	1269	1e-117	384 - 1089	78	563 / 724	None	ABC01216 ABC01222 ABC01223 ABC19393
AK373720	1174	3e-114	181 - 886	77	561 / 724	None	ABC01216 ABC01222 ABC01223 ABC19393
MLOC_54419.1	2705	5e-107	2281 - 2626	87	301 / 346	CUST_13113_PI390587928 CUST_34615_PI390587928 CUST_14519_PI390587928	ABC01216 ABC01222 ABC01223 ABC01240
MLOC_14656.1	876	9e-105	314 - 577	93	246 / 265	None	ABC01222 ABC01223 ABC01240 ABC29328
MLOC_14656.2	1086	9e-105	518 - 781	93	246 / 265	None	ABC01222 ABC01223 ABC01240 ABC29328
MLOC_56278.3	1287	2e-67	318 - 520	90	182 / 203	CUST_11708_PI390587928 CUST_14520_PI390587928 CUST_14503_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242