- Probe CUST_13113_PI390587928
- Source Contig U35_38554
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13113_PI390587928 | Hv_44K_v2 | ACGCTGCTCTTCCTCTACATCACCGTGGCCACGGTCATCGGGTACAAGCACCAGACGGAC | 16 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.311 | 0.322 | 1.378 | 2.080 | 1.108 | 1.381 |
| Raw | 115.799 | 180.896 | 711.766 | 1681.212 | 325.516 | 435.189 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_54419.3 | 1512 | 2e-24 | 887 - 946 | 100 | 60 / 60 | minus | ABC01216 ABC01222 ABC01223 ABC01225 ABC01237 ABC01240 ABC01242 ABC19393 |
| MLOC | MLOC_54419.2 | 3119 | 2e-24 | 2603 - 2662 | 100 | 60 / 60 | minus | ABC01216 ABC01222 ABC01223 ABC01237 ABC01240 ABC01242 |
| MLOC | MLOC_54419.1 | 2705 | 2e-24 | 2453 - 2512 | 100 | 60 / 60 | minus | ABC01216 ABC01222 ABC01223 ABC01240 |
| MLOC | AK252600.1 | 1275 | 3e-21 | 240 - 299 | 97 | 58 / 60 | plus | ABC01216 ABC01222 ABC01223 ABC01225 ABC01237 ABC01240 ABC01242 ABC29328 |
| JLOC1 | JLOC1_35029.1 | 1940 | 8e-25 | 460 - 519 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01222 | 1259 | 3e-25 | 192 - 251 | 100 | 60 / 60 | plus | ABC01222 |
| Harvest21 | ABC27080 | 665 | 6e-22 | 248 - 307 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC01215 | 657 | 6e-22 | 230 - 289 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_38554 | 644 | 3e-25 | 17 - 76 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13843 | 452 | 3e-25 | 289 - 348 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13825 | 1398 | 3e-25 | 235 - 294 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_31826 | 539 | 6e-22 | 276 - 335 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_13852 | 1366 | 6e-22 | 256 - 315 | 97 | 58 / 60 | plus |
Contig Sequence (644 bp)
>U35_38554 644 Hv_44K_v2 CGCCGAGTTCATCGCCACGCTGCTCTTCCTCTACATCACCGTGGCCACGGTCATCGGGTA CAAGCACCAGACGGACCCCGCGGTGAACAGCGCCGCCGACGCGGCGTGCGGCGGCGTGGG CGTGCTCGGCATCGCGTGGGCCTTCGGCGGCGGCGACTTCGCGGCCAAGGACTACACGGA CCCGCCGCCGGCCCCGCTGGTGGACGCGGCGGAGCTGGCGTCGTGGTCGCTGTACCGCGC CGTCATCGCCGAGTTCACCGCCGGCATCTCCGGGGGCCACATCAACCCGGCCGTGACCTT CGGCCTCTTCCTGGCGCGCAAGGTCTCCCTGGTCCGCGCGCTGCTCTACATGGTGGCGCA GTGCCTCGGCGCCATGTGCGGGGTCGGCCTCGTCAAGGCCTTCCAGAGCGCCTACTTCGT CAGGTACGGCGGCGGCGCCAACACGCTCGCCGCCGGATACTCCAAGGGCACCGGCCTCGC CGCGGAGATCATCGGCACCTTCGTGCTCGTCTACACCGTCTTCTCCGCCACCGACCCCAA GCGCAGCGCACGCGACTCTCACGTNCCGGTGTTGGCGCCCCTCCCGATCGGCTTCGCCGT GTTCATGGTCCACCTGGCCACCATCCCGATCACCGGCACCGGCA
Homology of Contig U35_38554 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g26690.2 | 286 | 5e-109 | protein|aquaporin protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g28760.2 | 266 | 1e-111 | |
| Arabidopsis v10 | AT3G53420.1 | 287 | 6e-89 | | Symbols: PIP2A, PIP2, PIP2;1 | plasma membrane intrinsic protein 2A | chr3:19803906-19805454 REVERSE LENGTH=287 |