barSeed - Barley Seed Development Database

Probe ABC01222

Source Contig ABC01222

barSeed

Links

Affymetrix Source Sequence (1259 bp)

>ABC01222 1259
CTCCAACTCCATTTTTTTCCAGCGAGAAGAAACCACACACACTGATGGCGAAGGACGAGG
TGATGGAGACCGGCGGCGGCGGCGACTTCGCGGCCAAGGACTACACGGACCCGCCGCCGG
CCCCGCTGGTGGACGCGGCGGAGCTGGCGTCGTGGTCGCTGTACCGCGCCGTCATCGCCG
AGTTCATCGCCACGCTGCTCTTCCTCTACATCACCGTGGCCACGGTCATCGGGTACAAGC
ACCAGACGGACCCCGCGGTGAACAGCGCCGCCGACGCGGCGTGCGGCGGCGTGGGCGTGC
TCGGCATCGCGTGGGCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGCA
TCTCCGGGGGCCACATCAACCCGGCCGTGACCTTCGGCCTCTTCCTGGCGCGCAAGGTCT
CCCTGGTCCGCGCGCTGCTCTACATGGTGGCGCAGTGCCTCGGCGCCATGTGCGGGGTCG
GCCTCGTCAAGGCCTTCCAGAGCGCCTACTTCGTCAGGTACGGCGGCGGCGCCAACACGC
TCGCCGCCGGATACTCCAAGGGCACCGGCCTCGCCGCGGAGATCATCGGCACCTTCGTGC
TCGTCTACACCGTCTTCTCCGCCACCGACCCCAAGCGCAGCGCACGCGACTCTCACGTCC
CGGTGTTGGCGCCCCTCCCGATCGGCTTCGCCGTGTTCATGGTCCACCTGGCCACCATCC
CGATCACCGGCACCGGCATCAACCCGGCCAGGAGCCTGGGGGCCGCCGTCATCTACAACA
AGGACAAGGCCTGGGATGATCAGTGGATCTTCTGGGTCGGCCCCATGATCGGCGCGGCGA
TCGCGGCCTTCTACCACCAGTACATACTCAGGGCCGGCGCCATCAAGGCCCTCGGCTCCT
TCAGGAGCAACGCGTAACGAGTTATCCATGTGATGTGCATGCAAGATTGAAGCAATGGCG
ACCTGTGCTGTGTCCATCCATCCAAAGAGAAAGCCGCTTTTGCAACTTCTCGACAGTTCA
GTTGGCCGCTGCAATGGTCGTGTTATTTATGTGTCGGCAGCTGCATATGCGTATGTGCCC
AGTCATGCGTGCCGTGTGTTGTAATTCGGTCCATGGGATCGCTTGTCTTAATTAGCCCGC
ATTCCTTTTCCTGTTTTAATTTAGCGACCATATGTATGATCGACCCAACGTCGCCACCTT
CTATCCAAATCATCAATCCGCCAAGCAAGAGATTCATCCCAAAAAAAAAAAAAAAAAAC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_54419.3	1512	0.0	1 - 1137	100	1137 / 1137	CUST_13113_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01237 ABC01240 ABC01242 ABC19393
MLOC_54419.2	3119	1e-68	839 - 980	100	142 / 142	CUST_13113_PI390587928 CUST_34615_PI390587928 CUST_14519_PI390587928	ABC01216 ABC01222 ABC01223 ABC01237 ABC01240 ABC01242
AK252600.1	1275	0.0	125 - 935	86	700 / 811	CUST_13113_PI390587928 CUST_35384_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01237 ABC01240 ABC01242 ABC29328
AK353861	1168	0.0	103 - 912	86	695 / 810	CUST_34668_PI390587928 CUST_35384_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01237 ABC01242
MLOC_13871.2	1881	0.0	304 - 1114	85	698 / 817	CUST_34650_PI390587928 CUST_35384_PI390587928 CUST_8517_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242 ABC39024
MLOC_13871.1	1607	0.0	304 - 1114	85	698 / 817	CUST_34650_PI390587928 CUST_35384_PI390587928 CUST_8517_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242 ABC39024
MLOC_54419.1	2705	1e-68	840 - 981	100	142 / 142	CUST_13113_PI390587928 CUST_34615_PI390587928 CUST_14519_PI390587928	ABC01216 ABC01222 ABC01223 ABC01240
MLOC_62649.1	1267	0.0	292 - 1109	84	697 / 827	CUST_34645_PI390587928 CUST_35384_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242 ABC32067
MLOC_18325.1	1446	0.0	285 - 1074	82	670 / 814	CUST_18696_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01237 ABC01242
AK250563.1	1289	0.0	136 - 929	82	679 / 828	CUST_11708_PI390587928 CUST_14520_PI390587928 CUST_14503_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
MLOC_56278.1	1729	0.0	804 - 1597	82	678 / 828	CUST_14520_PI390587928 CUST_211_PI415269222	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
MLOC_56278.4	884	1e-168	28 - 752	82	622 / 760	None	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
MLOC_56278.2	2119	7e-166	804 - 1470	83	574 / 694	CUST_11708_PI390587928 CUST_14520_PI390587928 CUST_211_PI415269222 CUST_14503_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
MLOC_44991.1	1447	2e-141	368 - 1141	79	636 / 806	CUST_34627_PI390587928 CUST_19131_PI390587928	ABC01222 ABC39980
AK355531	1278	1e-139	141 - 915	79	636 / 807	CUST_34627_PI390587928 CUST_19131_PI390587928	ABC01222
MLOC_80094.1	1170	3e-139	180 - 918	79	607 / 768	CUST_30465_PI390587928 CUST_36527_PI390587928 CUST_20150_PI390587928	ABC01216 ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01230 ABC01235 ABC01237 ABC01242 ABC19393 ABC31055 ABC47730
MLOC_80094.2	1506	3e-139	233 - 971	79	609 / 770	CUST_30465_PI390587928 CUST_36527_PI390587928 CUST_20150_PI390587928	ABC01216 ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01230 ABC01235 ABC01237 ABC01242 ABC19393 ABC47730
AK359099	1244	2e-136	132 - 913	78	632 / 808	CUST_14576_PI390587928 CUST_15816_PI390587928	ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01237 ABC01242 ABC19393
MLOC_552.2	1024	2e-136	123 - 904	78	632 / 808	CUST_15816_PI390587928	ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01237 ABC01242 ABC19393
MLOC_61081.1	1456	2e-122	126 - 895	77	619 / 799	CUST_15799_PI390587928 CUST_5428_PI390587928	ABC01222 ABC39980
MLOC_72670.1	1269	8e-121	384 - 1119	78	588 / 757	None	ABC01216 ABC01222 ABC01223 ABC19393
AK373720	1174	2e-117	151 - 886	77	586 / 757	None	ABC01216 ABC01222 ABC01223 ABC19393
MLOC_8032.1	593	4e-94	286 - 593	87	268 / 308	CUST_35384_PI390587928	ABC01222 ABC01223
MLOC_552.1	1349	2e-86	490 - 912	81	344 / 427	CUST_14576_PI390587928 CUST_15816_PI390587928	ABC01219 ABC01222 ABC01225 ABC01226 ABC01228 ABC01237 ABC01242 ABC19393
MLOC_56278.3	1287	2e-76	318 - 521	92	188 / 204	CUST_11708_PI390587928 CUST_14520_PI390587928 CUST_14503_PI390587928	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
MLOC_23039.1	780	5e-68	1 - 252	85	215 / 252	CUST_35384_PI390587928	ABC01222 ABC01223
MLOC_14656.1	876	3e-60	313 - 538	85	193 / 226	None	ABC01222 ABC01223 ABC01240 ABC29328
MLOC_14656.2	1086	3e-60	517 - 742	85	193 / 226	None	ABC01222 ABC01223 ABC01240 ABC29328