barSeed - Barley Seed Development Database

Probe CUST_8517_PI390587928

Source Contig U35_48479

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8517_PI390587928	Hv_44K_v2	GGAGTTCGCCATGTTTGCTTGCTGCTGTTTCTTCCAAGTGTGCTTTTCTTTTGCTCGCTC	-1	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.892	1.404	1.667	1.843	0.776	0.817
Raw	9.056	22.849	22.673	37.648	4.963	6.263

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13871.2	1881	2e-24	33 - 92	100	60 / 60	minus	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242 ABC39024
MLOC	MLOC_13871.1	1607	2e-24	33 - 92	100	60 / 60	minus	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242 ABC39024
JLOC1	JLOC1_9427.1	1496	8e-25	1253 - 1312	100	60 / 60	plus
Harvest21	ABC01236	1310	3e-25	1123 - 1182	100	60 / 60	plus
Harvest21	ABC39204	557	4e-24	46 - 103	100	58 / 58	minus
Harvest21	ABC50300	656	1e-23	42 - 102	98	60 / 61	minus
Harvest35	U35_13861	1326	3e-25	1139 - 1198	100	60 / 60	plus
Harvest35	U35_48479	656	1e-23	42 - 102	98	60 / 61	minus

Contig Sequence (656 bp)

>U35_48479 656 Hv_44K_v2
ACCAAATTCTCCACATACATACATACATACATACATACATAGAGCGAGCAAAAGAAAAGC
ACANCTTGGAAGAAACAGCAGCAAGCAAACATGGCGAACTCCGGAAACACGTCGACATAC
GAATGGACGGTCACATCAACATATGCACAAGCCGAGGAACGGTAGCAGCAGATGATGCGA
AGACTGGAGCCACTGAACCAAGCGGTGGGATCGAGCAGCCATAGCGCATTGGCTGGAGGC
GGCCTTCTTCTTCGCACATATCTACACTTCAGTGCCCCCCCTCGCGCGTCCGGCCGGAGC
TACGGGCGACTTAGTTGCTCCTGTAGGACCCGAGCTTGGCGGCGCTGGCCCTCAGCACAT
ACTGGTGGTAGGCGGCGGCAATGGCGGCGCCGATCAGTGGCCCCACCCAGAAGATCCACG
GGATGTGGGAATCACGGGCGTTGCGCTTGGGGTCGGTGGCGGAGAAGACCGTGTAGACGA
GCACGAAGGTGCCGATGATCTCGGCCGCTAGACCGGTGCCCTTGGAGTAGCCTGCGCTGA
GCTCGTTGGCGCCACCGCCGTACCGCACGTAGTAGGAGCTCTGGAAGCCCTTGACAAGGC
CGACGCCGCAGATGGCGCCGAGGCACTGCGCGATGATGTAGAGCAGCGCCCGGATG

Homology of Contig U35_48479 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None