- Probe CUST_35384_PI390587928
- Source Contig U35_31826
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35384_PI390587928 | Hv_44K_v2 | TTCGTGGCCACGCTGCTCTTCCTCTACATCACCGTGGCCACCGTCATCGGGTACAAGCAC | 266 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.263 | 0.265 | 1.293 | 1.852 | 1.054 | 1.234 |
| Raw | 57.673 | 93.268 | 392.795 | 876.863 | 182.720 | 230.881 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252600.1 | 1275 | 2e-24 | 231 - 290 | 100 | 60 / 60 | plus | ABC01216 ABC01222 ABC01223 ABC01225 ABC01237 ABC01240 ABC01242 ABC29328 |
| MLOC | AK353861 | 1168 | 7e-23 | 208 - 267 | 98 | 59 / 60 | plus | ABC01216 ABC01222 ABC01223 ABC01225 ABC01237 ABC01242 |
| MLOC | MLOC_23039.1 | 780 | 7e-23 | 87 - 146 | 98 | 59 / 60 | minus | ABC01222 ABC01223 |
| MLOC | MLOC_8032.1 | 593 | 7e-23 | 391 - 450 | 98 | 59 / 60 | plus | ABC01222 ABC01223 |
| MLOC | MLOC_62649.1 | 1267 | 3e-21 | 965 - 1024 | 97 | 58 / 60 | minus | ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242 ABC32067 |
| MLOC | MLOC_13871.2 | 1881 | 3e-21 | 967 - 1026 | 97 | 58 / 60 | minus | ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242 ABC39024 |
| MLOC | MLOC_13871.1 | 1607 | 3e-21 | 967 - 1026 | 97 | 58 / 60 | minus | ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242 ABC39024 |
| JLOC1 | JLOC1_15931.1 | 697 | 4e-23 | 87 - 146 | 98 | 59 / 60 | minus | |
| JLOC1 | JLOC1_5326.1 | 587 | 4e-23 | 385 - 444 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_41017.1 | 1381 | 2e-21 | 250 - 309 | 97 | 58 / 60 | plus | |
| JLOC1 | JLOC1_9427.1 | 1496 | 2e-21 | 319 - 378 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC27080 | 665 | 3e-25 | 239 - 298 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01215 | 657 | 3e-25 | 221 - 280 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01238 | 1324 | 1e-23 | 217 - 276 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC01223 | 1125 | 1e-23 | 199 - 258 | 98 | 59 / 60 | plus | ABC01223 |
| Harvest21 | ABC01236 | 1310 | 6e-22 | 189 - 248 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC01217 | 504 | 6e-22 | 204 - 263 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_31826 | 539 | 3e-25 | 267 - 326 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13852 | 1366 | 3e-25 | 247 - 306 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13857 | 1148 | 1e-23 | 212 - 271 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_13866 | 587 | 6e-22 | 212 - 271 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_13861 | 1326 | 6e-22 | 205 - 264 | 97 | 58 / 60 | plus |
Contig Sequence (539 bp)
>U35_31826 539 Hv_44K_v2 CTGGTACCGGTCCTCCATTCCTCGAGCACTGTTGGCCTACTGACCACACGGAGCAGCCTC AGCGCACTAGCTCGCCGGACCTTGGGCACCACCGCACGCCGGACCTTGTCGATCGGTTAA GGGGGGCGACGATGGCCAAGGACATCGAGGCGGCGCCACCCGGCGGGGAGTACGCGGCCA AGGACTACTCCGACCCGCCGCCGGCGCCGCTCTTCGACGCCGAGGAGCTCACCAAGTGGT CCCTGTACCGCGCGGTGATCGCCGAGTTCGTGGCCACGCTGCTCTTCCTCTACATCACCG TGGCCACCGTCATCGGGTACAAGCACCAGGCGGACCCCGCCGGCCCCAACGCCGCCGACG CGGCCTGCAGCGGCGTGGGAATCCTGGGCATCGCCTGGGCGTTCGGCGGCATGATCTTCG TCCTCGTCTACTGCACCGCCGGTGTCTCGGGTGGCCACATCAACCCGGCAGTGACCTTCG GGCTGTTCCTGGCGCGTAAGGTTTCGCTGGTGCGCGCGGTGCTCTACATCATCGCGCAG
Homology of Contig U35_31826 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g41860.4 | 208 | 7e-74 | protein|aquaporin protein, putative, expressed |
| Brachypodium v1_2 | Bradi5g15970.1 | 288 | 5e-74 | |
| Arabidopsis v10 | AT2G37180.1 | 285 | 2e-63 | | Symbols: RD28, PIP2;3, PIP2C | Aquaporin-like superfamily protein | chr2:15617779-15618937 FORWARD LENGTH=285 |